BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3070703.2.1
(1214 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819880.1|CN819880 HRO4407_C04_F07ZS5 Lib AA069E1X Aven... 379 e-105
>gb|CN819880.1|CN819880 HRO4407_C04_F07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C04_F07, mRNA
sequence
Length = 741
Score = 379 bits (191), Expect = e-105
Identities = 492/592 (83%), Gaps = 9/592 (1%)
Strand = Plus / Minus
Query: 345 cttctgccatttccacgcctgggcaaggctttggccaagatccgtgtattgggctgtcca 404
||||||||||||||| ||| || ||||||| || |||||||||| ||||||||||||
Sbjct: 618 cttctgccatttccatgccgtcgcgaggctttcgcgaagatccgtgcgttgggctgtcca 559
Query: 405 gttgaggtccatgaggattttcgacggatcgctgtatacctcggcataatctccaggtct 464
||| || || | |||| || ||||| | |||||| || || ||||| ||||| |||||
Sbjct: 558 gttcagctcgtcgcggatcttggacgggttgctgtaaacttcagcatagtctcctggtct 499
Query: 465 acgggcaagatattcgaccttgatagaagctcccgttgccttcttgcaagcttctacaaa 524
|||| ||| |||||||||||||| | |||||| || ||| |||||| |||||||||||
Sbjct: 498 ccgggtaaggtattcgaccttgatggtagctcctgtcgccgccttgcacgcttctacaaa 439
Query: 525 ctcagtcactgatctaccttggcctgttccgacattgtagattccaactttgcctggctg 584
||| | ||||| |||||||| || || || |||||||||||||||||||||| ||||
Sbjct: 438 ctcctttactgacctaccttgccccgtgccaacattgtagattccaactttgctaggctc 379
Query: 585 agctttaccaagagcttttacgtgagcatctacaagatctgtgacatcgatgtagtctct 644
|||||||||||||||||| || |||||||| || |||||||||||||| |||||||| ||
Sbjct: 378 agctttaccaagagctttgacatgagcatcgacgagatctgtgacatctatgtagtccct 319
Query: 645 aacgcaagttccatctgcagtggagtaatcggttccacgaacctttagccctggaatgat 704
|| ||||||||||| ||||| | ||| || ||||| |||||||| |||||||||||| |
Sbjct: 318 aatacaagttccatcagcagtagggtagtccgttcctcgaaccttcagccctggaatggt 259
Query: 705 tcccaaagctgcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggcct 764
||| | |||||||| || |||||||| || |||| ||| |||||||| | |||||||||
Sbjct: 258 tcctgacgctgcatcgaaacaagcaccagaaatccttccgtgctcgcgcaactctggcct 199
Query: 765 tggagcttctcctagccgtccctctgggtctgatccaatcacgttgaagtatcttaagat 824
||||||||| || || ||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct: 198 tggagcttccccgaggagtccctccgggtctgatccaatcacattgaagtaccttaagat 139
Query: 825 catgacagccatatttgattgcttctttgattttgtaaaatctaagatgatgtcctccgc 884
|||||||||||| ||||| |||||||| |||||||| ||||||||||| |
Sbjct: 138 catgacagccatgtttga---gttctttga------aaaatctagaatgatgtcctctga 88
Query: 885 catcttctttgccttaccatatggattgataggattctgaggagttgtttct 936
|||||| ||||| || |||||||||||||||||| |||||| |||||||||
Sbjct: 87 catcttttttgctttcccatatggattgataggaacctgaggtgttgtttct 36
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3075
Number of Sequences: 8143
Number of extensions: 3075
Number of successful extensions: 906
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 902
Number of HSP's gapped (non-prelim): 3
length of query: 1214
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1198
effective length of database: 4,572,175
effective search space: 5477465650
effective search space used: 5477465650
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)