BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3062418.2.1
(851 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820950.1|CN820950 HRO4421_G11_M21ZS5 Lib AA069E1X Aven... 244 1e-064
gb|CN815884.1|CN815884 HRO4511_E10_J19ZS5 Lib AA071E1X Aven... 214 1e-055
gb|CN821160.1|CN821160 HRO4428_B09_D18ZS5 Lib AA069E1X Aven... 188 6e-048
gb|CN821349.1|CN821349 HRO4424_C10_F20ZS5 Lib AA069E1X Aven... 90 4e-018
gb|CN820243.1|CN820243 HRO4417_B07_C13ZS5 Lib AA069E1X Aven... 68 1e-011
gb|BE439373.1|BE439373 CDO476_WHE05H11R ITEC CDO Oat cDNA L... 38 0.012
gb|CN816521.1|CN816521 HRO4521_G01_M01ZS5 Lib AA071E1X Aven... 34 0.19
>gb|CN820950.1|CN820950 HRO4421_G11_M21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_G11_M21, mRNA
sequence
Length = 840
Score = 244 bits (123), Expect = 1e-064
Identities = 536/671 (79%), Gaps = 2/671 (0%)
Strand = Plus / Plus
Query: 1 aaactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggtt 60
||||||||| ||||||||||| || || |||||||| || || |||||| ||||||||||
Sbjct: 53 aaactcaactgaagaccaagctgcagcacaaagagccagagacttccatattggttggtt 112
Query: 61 tgctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagaga 120
|| ||||||| ||| ||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 113 tgttgatccactaa-taaatggacattacccacaaataatgcaagaccttgtgaaagaga 171
Query: 121 ggctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacatt 180
|| ||||| | ||| ||||| || |||||||| ||||||| |||||||| || || |||
Sbjct: 172 ggttgccc-aggttcactcctgatcaagctaaactggtcaaaggctcagcagactatatt 230
Query: 181 gggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagcct 240
|||||||| |||||||| ||||| || ||||||| |||||| |||| ||||||| ||
Sbjct: 231 gggatcaaccaatacactgctagttatatgaagggacagaaattgctgcagcagactccc 290
Query: 241 actagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatc 300
||||||||||| ||||||||||||||| |||| | | ||| || || ||||| ||
Sbjct: 291 actagctactccgctgattggcaggttacttatgcatatgcacgtaatgggaaaccaata 350
Query: 301 ggaccacaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtg 360
||||| |||| ||||| | ||||||||||||| || ||||||||||| ||||||
Sbjct: 351 ggacctaaggcaaattctgattggctttacatcgctccgtttgggatgtacggatgtgtg 410
Query: 361 aactatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggat 420
|| || | ||||| |||||||| |||||| |||| |||||||| || || |||||||||
Sbjct: 411 aattacatcaagcagaagtatggtaatccagcagtcttcataactgaaaatggaatggat 470
Query: 421 cagccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctac 480
|| || || ||| | || | || |||||| ||| ||| ||||| ||||| | ||||||
Sbjct: 471 caacctgggaacctcacccttgatcagtacttgcgcgataccacgagggttcggttctac 530
Query: 481 aaaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctac 540
|||||||| || |||| ||||| |||||| | || || |||||| |||||||
Sbjct: 531 cggagctacctcaacgaactgaagaaaggcatcgacaatggtgcaaacgtggttggctac 590
Query: 541 ttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttgga 600
|| || ||||||||||| |||||||| |||||| || || ||||| || ||||| ||
Sbjct: 591 tttgcatggtctctcctggacaactttgagtggagctctggctacacatctaagttcggc 650
Query: 601 atcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctac 660
|||||||| |||||||||| || ||| || || || || || |||||||| ||||||
Sbjct: 651 atcgtctatgtcgacttcaacagcccctccctagagcgtcatccgaaggcgtcggcctac 710
Query: 661 tggttcagaga 671
|||||||||||
Sbjct: 711 tggttcagaga 721
>gb|CN815884.1|CN815884 HRO4511_E10_J19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_E10_J19, mRNA sequence
Length = 707
Score = 214 bits (108), Expect = 1e-055
Identities = 500/628 (79%), Gaps = 2/628 (0%)
Strand = Plus / Plus
Query: 44 ttccatgttggttggtttgctgatccattaaataaatggacattatccacagataatgca 103
|||||| |||||||||||| ||||||| ||| ||||||||||||| ||||| ||||||||
Sbjct: 11 ttccatattggttggtttgttgatccactaa-taaatggacattacccacaaataatgca 69
Query: 104 agatattgtgaaagagaggctgccccaagtttactccggagcaagctaagttggtcaagg 163
||| |||||||||||||| ||||| | ||| ||||| || |||||||| ||||||| |
Sbjct: 70 agaccttgtgaaagagaggttgccc-aggttcactcctgatcaagctaaactggtcaaag 128
Query: 164 gctcagcggattacattgggatcaatcaatacaccgctagctacgtgaagggccagaaac 223
||||||| || || ||||||||||| |||||||| ||||| || ||||||| ||||||
Sbjct: 129 gctcagcagactatattgggatcaaccaatacactgctagttatatgaagggacagaaat 188
Query: 224 tgctccagcagaagcctactagctactcagctgattggcaggttcaatatgttttagaac 283
|||| ||||||| || ||||||||||| ||||||||||||||| |||| | | ||
Sbjct: 189 tgctgcagcagactcccactagctactccgctgattggcaggttacttatgcatatgcac 248
Query: 284 ggaacggcaaaccgatcggaccacaggcgaattcaaagtggctttacatcgtcccagaag 343
| || || ||||| || ||||| |||| ||||| | ||||||||||||| || |
Sbjct: 249 gtaatgggaaaccaataggacctaaggcaaattctgattggctttacatcgctccgtttg 308
Query: 344 ggatgtacggttgtgtgaactatctgaagcacaagtatggaaatccaacagttttcataa 403
|||||||||| |||||||| || | ||||| |||||||| |||||| |||| |||||||
Sbjct: 309 ggatgtacggatgtgtgaattacatcaagcagaagtatggtaatccagcagtcttcataa 368
Query: 404 ccgagaacggaatggatcagccaggaaacttgactcgtggccagtacctgcacgacacca 463
| || || ||||||||||| || || ||| | || | || |||||| ||| ||| ||||
Sbjct: 369 ctgaaaatggaatggatcaacctgggaacctcacccttgatcagtacttgcgcgatacca 428
Query: 464 caagggtgcaattctacaaaggctacctcgctgagctgaggaaagccatcgatgacggcg 523
| ||||| | |||||| |||||||| || |||| ||||| |||||| | || |
Sbjct: 429 cgagggttcggttctaccggagctacctcaacgaactgaagaaaggcatcgacaatggtg 488
Query: 524 ccgacgtggctggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggtt 583
| |||||| ||||||||| || ||||||||||| |||||||| |||||| || || |
Sbjct: 489 caaacgtggttggctactttgcatggtctctcctggacaactttgagtggagctctggct 548
Query: 584 acacgtccaagtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacacc 643
|||| || ||||| || |||||||| |||||||||| || ||| || || || || |
Sbjct: 549 acacatctaagttcggcatcgtctatgtcgacttcaacagcccctccctagagcgtcatc 608
Query: 644 ccaaggcgtcagcctactggttcagaga 671
| |||||||| |||||||||||||||||
Sbjct: 609 cgaaggcgtcggcctactggttcagaga 636
>gb|CN821160.1|CN821160 HRO4428_B09_D18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_B09_D18, mRNA
sequence
Length = 678
Score = 188 bits (95), Expect = 6e-048
Identities = 407/511 (79%)
Strand = Plus / Plus
Query: 161 agggctcagcggattacattgggatcaatcaatacaccgctagctacgtgaagggccaga 220
|||||||||| || || |||||||||||||||||||||||||| || ||||||| ||||
Sbjct: 8 agggctcagcagactatattgggatcaatcaatacaccgctagttatatgaagggacaga 67
Query: 221 aactgctccagcagaagcctactagctactcagctgattggcaggttcaatatgttttag 280
|| |||| ||||||| ||| ||||||||||| ||||||||||||||| |||| | |
Sbjct: 68 aattgctgcagcagacgcccactagctactccgctgattggcaggttacttatgcatatg 127
Query: 281 aacggaacggcaaaccgatcggaccacaggcgaattcaaagtggctttacatcgtcccag 340
||| || || ||||| || ||||| |||||||||| | ||||||||||| | |||
Sbjct: 128 cacgtaatgggaaaccaataggacctaaggcgaattctgattggctttacatggctccat 187
Query: 341 aagggatgtacggttgtgtgaactatctgaagcacaagtatggaaatccaacagttttca 400
||||||||||| |||||||| || | ||||| |||||||| |||||| |||| ||||
Sbjct: 188 ttgggatgtacggatgtgtgaattacatcaagcagaagtatggtaatccagcagtcttca 247
Query: 401 taaccgagaacggaatggatcagccaggaaacttgactcgtggccagtacctgcacgaca 460
|||| || || ||||||||||| || || ||| | || |||| |||||| ||| ||| |
Sbjct: 248 taactgaaaatggaatggatcaacctgggaacctcacccgtgatcagtacttgcgcgata 307
Query: 461 ccacaagggtgcaattctacaaaggctacctcgctgagctgaggaaagccatcgatgacg 520
|||| ||||| | |||||| |||||||| || |||| ||||| |||||| | |
Sbjct: 308 ccacgagggttcggttctaccggagctacctcaacgaactgaagaaaggcatcgacaatg 367
Query: 521 gcgccgacgtggctggctacttcgcttggtctctcctcgacaacttcgagtggcagtcag 580
|||| |||||| ||||||||| ||||||||||| || |||||||| |||||| || |
Sbjct: 368 gcgcaaacgtggttggctactttgcttggtctctgctggacaactttgagtggagctctg 427
Query: 581 gttacacgtccaagtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgac 640
| ||||| |||||||| || |||||||| |||||||||| || ||| || || || |
Sbjct: 428 gctacacatccaagttcggcatcgtctatgtcgacttcaacagcccctccctagagcgtc 487
Query: 641 accccaaggcgtcagcctactggttcagaga 671
| || |||||||| |||||||||||||||||
Sbjct: 488 atccgaaggcgtcggcctactggttcagaga 518
>gb|CN821349.1|CN821349 HRO4424_C10_F20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_C10_F20, mRNA
sequence
Length = 628
Score = 89.7 bits (45), Expect = 4e-018
Identities = 258/329 (78%)
Strand = Plus / Plus
Query: 343 gggatgtacggttgtgtgaactatctgaagcacaagtatggaaatccaacagttttcata 402
||||||||||| |||||||| || | ||||| |||||||| |||||| |||| ||||||
Sbjct: 134 gggatgtacggatgtgtgaattacatcaagcagaagtatggtaatccagcagtcttcata 193
Query: 403 accgagaacggaatggatcagccaggaaacttgactcgtggccagtacctgcacgacacc 462
|| || || ||||||||||| || || ||| | || | || |||||| ||| ||| |||
Sbjct: 194 actgaaaatggaatggatcaacctgggaacctcacccttgatcagtacttgcgcgatacc 253
Query: 463 acaagggtgcaattctacaaaggctacctcgctgagctgaggaaagccatcgatgacggc 522
|| ||||| | |||||| |||||||| || |||| ||||| |||||| | ||
Sbjct: 254 acgagggttcggttctaccggagctacctcaacgaactgaagaaaggcatcgacaatggt 313
Query: 523 gccgacgtggctggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggt 582
|| |||||| ||||||||| || ||||||||||| |||||||| |||||| || ||
Sbjct: 314 gcaaacgtggttggctactttgcatggtctctcctggacaactttgagtggagctctggc 373
Query: 583 tacacgtccaagtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacac 642
||||| || ||||| || |||||||| |||||||||| || ||| || || || ||
Sbjct: 374 tacacatctaagttcggcatcgtctatgtcgacttcaacagcccctccctagagcgtcat 433
Query: 643 cccaaggcgtcagcctactggttcagaga 671
|| |||||||| |||||||||||||||||
Sbjct: 434 ccgaaggcgtcggcctactggttcagaga 462
>gb|CN820243.1|CN820243 HRO4417_B07_C13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_B07_C13, mRNA
sequence
Length = 335
Score = 67.9 bits (34), Expect = 1e-011
Identities = 112/138 (81%)
Strand = Plus / Plus
Query: 534 tggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaa 593
||||||||| || ||||||||||| |||||||| |||||| || || ||||| || ||
Sbjct: 16 tggctactttgcatggtctctcctggacaactttgagtggagctctggctacacatctaa 75
Query: 594 gtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtc 653
||| || |||||||| |||||||||| || ||| || || || || || ||||||||
Sbjct: 76 gttcggcatcgtctatgtcgacttcaacagcccctccctagagcgtcatccgaaggcgtc 135
Query: 654 agcctactggttcagaga 671
|||||||||||||||||
Sbjct: 136 ggcctactggttcagaga 153
>gb|BE439373.1|BE439373 CDO476_WHE05H11R ITEC CDO Oat cDNA Library Avena sativa cDNA
clone CDO476_WHE05H11, mRNA sequence
Length = 207
Score = 38.2 bits (19), Expect = 0.012
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 25 ggctcaaagagcaagggat 43
|||||||||||||||||||
Sbjct: 62 ggctcaaagagcaagggat 80
>gb|CN816521.1|CN816521 HRO4521_G01_M01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_G01_M01, mRNA sequence
Length = 694
Score = 34.2 bits (17), Expect = 0.19
Identities = 35/41 (85%)
Strand = Plus / Plus
Query: 534 tggctacttcgcttggtctctcctcgacaacttcgagtggc 574
||||||||||| ||| |||| | ||||||||||||||||
Sbjct: 312 tggctacttcgtgtggagtctcatagacaacttcgagtggc 352
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2034
Number of Sequences: 8143
Number of extensions: 2034
Number of successful extensions: 553
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 24
length of query: 851
length of database: 4,702,463
effective HSP length: 16
effective length of query: 835
effective length of database: 4,572,175
effective search space: 3817766125
effective search space used: 3817766125
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)