BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3024030.2.1
(412 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819830.1|CN819830 HRO4404_E10_J20ZS5 Lib AA069E1X Aven... 34 0.092
gb|CN815587.1|CN815587 HRO4513_C12_E23ZS5 Lib AA071E1X Aven... 32 0.36
gb|CN816160.1|CN816160 HRO4517_F06_K11ZS5 Lib AA071E1X Aven... 32 0.36
gb|CN816189.1|CN816189 HRO4517_H11_O21ZS5 Lib AA071E1X Aven... 32 0.36
>gb|CN819830.1|CN819830 HRO4404_E10_J20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_E10_J20, mRNA
sequence
Length = 415
Score = 34.2 bits (17), Expect = 0.092
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 13 tacaaaccaaaccaaac 29
|||||||||||||||||
Sbjct: 363 tacaaaccaaaccaaac 347
>gb|CN815587.1|CN815587 HRO4513_C12_E23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_C12_E23, mRNA sequence
Length = 466
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 16 aaaccaaaccaaacca 31
||||||||||||||||
Sbjct: 415 aaaccaaaccaaacca 400
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 21 aaaccaaaccaaacca 36
||||||||||||||||
Sbjct: 415 aaaccaaaccaaacca 400
>gb|CN816160.1|CN816160 HRO4517_F06_K11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_F06_K11, mRNA sequence
Length = 816
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 19 ccaaaccaaaccaaac 34
||||||||||||||||
Sbjct: 136 ccaaaccaaaccaaac 121
>gb|CN816189.1|CN816189 HRO4517_H11_O21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_H11_O21, mRNA sequence
Length = 901
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 19 ccaaaccaaaccaaac 34
||||||||||||||||
Sbjct: 536 ccaaaccaaaccaaac 521
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2384
Number of Sequences: 8143
Number of extensions: 2384
Number of successful extensions: 783
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 14
length of query: 412
length of database: 4,702,463
effective HSP length: 16
effective length of query: 396
effective length of database: 4,572,175
effective search space: 1810581300
effective search space used: 1810581300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)