BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023309.2.1
(1096 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815937.1|CN815937 HRO4515_B04_D07ZS5 Lib AA071E1X Aven... 329 3e-090
gb|CK780282.1|CK780282 umn815 UMN cDNA from oat Avena sativ... 123 4e-028
gb|AA231859.1|AA231859 CDO59.F cDNA from oat Avena sativa c... 34 0.25
>gb|CN815937.1|CN815937 HRO4515_B04_D07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_B04_D07, mRNA sequence
Length = 809
Score = 329 bits (166), Expect = 3e-090
Identities = 274/310 (88%)
Strand = Plus / Plus
Query: 167 ctcgaagaacttaagaagtccctaacagccgttttttcccagtttgggaaaattcttgat 226
||||||||||||||||||||||| | |||||||| || |||||||| |||||||||||
Sbjct: 4 ctcgaagaacttaagaagtccctcaacgccgttttctctcagtttggcaaaattcttgaa 63
Query: 227 gtgcttgctttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagatgtc 286
||||||||||| |||||||||||||||||||| || || |||||||| || ||||||||
Sbjct: 64 gtgcttgcttttaagactttgaagcataaagggcaggcatgggttgtgtttgaagatgtt 123
Query: 287 gcatcagctactgaggctctgaagaggatgcagggctttcccttctatgacaaaactatg 346
|||||||| || ||||| ||||| ||||||| | |||||||||||||||||| |||||
Sbjct: 124 gcatcagcaaccaaggctttgaaggggatgcaagattttcccttctatgacaaacctatg 183
Query: 347 agaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcacctttgta 406
| ||||||||||||||||||||| ||||| || ||||||| |||||||||||||| |||
Sbjct: 184 aaaattcaatatgccaagaccaagtcagacgttgtagcaaaagctgatggcaccttcgta 243
Query: 407 cctcgagaaagaagaaagaggactgatgaaaaatctgaaaagaagcagaagcgcgagcat 466
|||||||||||||| ||||||| |||||||||| ||||||||||||||||||| |||||
Sbjct: 244 cctcgagaaagaaggaagaggaatgatgaaaaacctgaaaagaagcagaagcgtgagcag 303
Query: 467 caccatgatg 476
||||| ||||
Sbjct: 304 caccacgatg 313
Score = 123 bits (62), Expect = 4e-028
Identities = 146/174 (83%)
Strand = Plus / Plus
Query: 569 agggtcatgatgccagagattatcgtaccaaacaacatcttgtttgtccaaaacttgcca 628
||||||||||||||||||||||| || ||||||| ||| |||| |||||||| | |||
Sbjct: 397 agggtcatgatgccagagattattgtgccaaacagcattctgttcgtccaaaatctccca 456
Query: 629 cacgagacgacgcccatgatgctccagatgctcttctgccagtaccctggcttcaaggag 688
||||| ||||| ||||| | || |||||| ||||||||||||||| || ||||||||
Sbjct: 457 cacgacacgaccgccatggttctgcagatgttcttctgccagtaccaagggttcaaggaa 516
Query: 689 gttcggatgatcgaggcgaagcctgggattgctttcgtggagtatggagacgag 742
|| ||| |||||| | |||||||| || ||||||||||||||||||||||||
Sbjct: 517 gtgaggacgatcgaaacaaagcctggaatcgctttcgtggagtatggagacgag 570
>gb|CK780282.1|CK780282 umn815 UMN cDNA from oat Avena sativa cDNA clone JMT15 5', mRNA
sequence
Length = 555
Score = 123 bits (62), Expect = 4e-028
Identities = 146/174 (83%)
Strand = Plus / Minus
Query: 569 agggtcatgatgccagagattatcgtaccaaacaacatcttgtttgtccaaaacttgcca 628
||||||||||||||||||||||| || ||||||| ||| |||| |||||||| | |||
Sbjct: 403 agggtcatgatgccagagattattgtgccaaacagcattctgttcgtccaaaatctccca 344
Query: 629 cacgagacgacgcccatgatgctccagatgctcttctgccagtaccctggcttcaaggag 688
||||| ||||| ||||| | || |||||| ||||||||||||||| || ||||||||
Sbjct: 343 cacgacacgaccgccatggttctgcagatgttcttctgccagtaccaagggttcaaggaa 284
Query: 689 gttcggatgatcgaggcgaagcctgggattgctttcgtggagtatggagacgag 742
|| ||| |||||| | |||||||| || ||||||||||||||||||||||||
Sbjct: 283 gtgaggacgatcgaaacaaagcctggaatcgctttcgtggagtatggagacgag 230
Score = 89.7 bits (45), Expect = 5e-018
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 408 ctcgagaaagaagaaagaggactgatgaaaaatctgaaaagaagcagaagcgcgagcatc 467
||||||||||||| ||||||| |||||||||| ||||||||||||||||||| ||||| |
Sbjct: 555 ctcgagaaagaaggaagaggaatgatgaaaaacctgaaaagaagcagaagcgtgagcagc 496
Query: 468 accatgatg 476
|||| ||||
Sbjct: 495 accacgatg 487
>gb|AA231859.1|AA231859 CDO59.F cDNA from oat Avena sativa cDNA clone CDO59, mRNA
sequence
Length = 338
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7 ccgaggggagagagaaa 23
|||||||||||||||||
Sbjct: 22 ccgaggggagagagaaa 38
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2924
Number of Sequences: 8143
Number of extensions: 2924
Number of successful extensions: 867
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 860
Number of HSP's gapped (non-prelim): 7
length of query: 1096
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1080
effective length of database: 4,572,175
effective search space: 4937949000
effective search space used: 4937949000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)