BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012883.2.1
(1189 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816561.1|CN816561 HRO4522_B07_C14ZS5 Lib AA071E1X Aven... 272 7e-073
gb|CN820670.1|CN820670 HRO4416_A10_B20ZS5 Lib AA069E1X Aven... 222 6e-058
>gb|CN816561.1|CN816561 HRO4522_B07_C14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_B07_C14, mRNA sequence
Length = 883
Score = 272 bits (137), Expect = 7e-073
Identities = 242/277 (87%)
Strand = Plus / Plus
Query: 729 gcgacatgatgctgtaagggatctagagaggaagcttctggagttgcaacagatattcat 788
|||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||| |
Sbjct: 483 gcgacatgatgctgtaagggatctggagaggaagctcctggagctgcagcagatattcct 542
Query: 789 ggacatggcagttcttgttgaggcgcaaggagacatgatcaacaacatcgagacccatgt 848
||| |||||||| | ||||| || |||||||||||||||||| |||||||||| |||||
Sbjct: 543 ggatatggcagtgttggttgatgctcaaggagacatgatcaaccacatcgagacacatgt 602
Query: 849 ctcgaacgccaccaaccacatacagcaaggtgtgagcgcgctccagaacgcgaagaaact 908
|| || || |||||||||||| |||||| ||| |||| ||||||||||| ||||| ||
Sbjct: 603 ttcaaatgctaccaaccacatatcgcaaggcgtgggcgccctccagaacgcaaagaagct 662
Query: 909 gcagaggaattcgaggaagtggatgtgctacgccatcatcatactgctggtgatagtcgt 968
||||||||| ||||| |||||||||||||||||||||||| | || || ||| |||| ||
Sbjct: 663 gcagaggaactcgagaaagtggatgtgctacgccatcatccttctcctcgtggtagtggt 722
Query: 969 ggtcattgtcgtcgcagtcatccagccatggaagaag 1005
| |||| ||||||||||| ||||||||||||||||||
Sbjct: 723 gatcatcgtcgtcgcagttatccagccatggaagaag 759
>gb|CN820670.1|CN820670 HRO4416_A10_B20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_A10_B20, mRNA
sequence
Length = 564
Score = 222 bits (112), Expect = 6e-058
Identities = 220/256 (85%)
Strand = Plus / Plus
Query: 746 gggatctagagaggaagcttctggagttgcaacagatattcatggacatggcagttcttg 805
||||||| ||||||||||| |||||| |||| ||||||||| |||| |||||||| | |
Sbjct: 11 gggatctggagaggaagctcctggagctgcagcagatattcctggatatggcagtgttgg 70
Query: 806 ttgaggcgcaaggagacatgatcaacaacatcgagacccatgtctcgaacgccaccaacc 865
|||| || |||||||||||||||||| |||||||||| ||||| || || || |||||||
Sbjct: 71 ttgatgctcaaggagacatgatcaaccacatcgagacacatgtttcaaatgctaccaacc 130
Query: 866 acatacagcaaggtgtgagcgcgctccagaacgcgaagaaactgcagaggaattcgagga 925
||||| |||||| ||| | || ||||||||||| ||||| ||||||||||| ||||| |
Sbjct: 131 acatatcgcaaggcgtgggtgctctccagaacgcaaagaagctgcagaggaactcgagaa 190
Query: 926 agtggatgtgctacgccatcatcatactgctggtgatagtcgtggtcattgtcgtcgcag 985
||||||||||||||||||||||| | || || ||| |||| ||| |||| ||||||||||
Sbjct: 191 agtggatgtgctacgccatcatccttctcctcgtggtagtggtgatcatcgtcgtcgcag 250
Query: 986 tcatccagccatggaa 1001
| ||||||||||||||
Sbjct: 251 ttatccagccatggaa 266
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3185
Number of Sequences: 8143
Number of extensions: 3185
Number of successful extensions: 910
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 2
length of query: 1189
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1173
effective length of database: 4,572,175
effective search space: 5363161275
effective search space used: 5363161275
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)