BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3012873.2.2
         (1520 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815837.1|CN815837  HRO4511_A06_B11ZS5 Lib AA071E1X Aven...   168   9e-042
gb|CN817974.1|CN817974  HRO4460_G05_M10ZS5 Lib AA070E1X Aven...    34   0.35 
gb|CN821118.1|CN821118  HRO4427_F12_L23ZS5 Lib AA069E1X Aven...    34   0.35 

>gb|CN815837.1|CN815837 HRO4511_A06_B11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
            sativa cDNA clone HRO4511_A06_B11, mRNA sequence
          Length = 741

 Score =  168 bits (85), Expect = 9e-042
 Identities = 139/157 (88%)
 Strand = Plus / Plus

                                                                        
Query: 1027 gcgtcctccaccgcgaggacgtcgtccgcatcctcgccaagctcttccccgagtaccccg 1086
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 585  gcgtcctccaccgcgaggacgtcgtccgcatcctctccaagctcttccccgagtaccccg 644

                                                                        
Query: 1087 tcccagccaggtgctccgacgaggtgaatccgcggaagcagccgtacaagttctccaacc 1146
            ||||  |||||||||| |||||||  ||  || |||||||||| |||||| | || ||||
Sbjct: 645  tccccaccaggtgctctgacgaggcaaactcgaggaagcagccatacaagatgtcgaacc 704

                                                 
Query: 1147 agaagctccgggacctggggctgcagttccggccggt 1183
            ||||||||| |||||| |||||  ||||| |||||||
Sbjct: 705  agaagctccaggacctcgggctcgagttcaggccggt 741



>gb|CN817974.1|CN817974 HRO4460_G05_M10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4460_G05_M10, mRNA sequence
          Length = 457

 Score = 34.2 bits (17), Expect = 0.35
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 604 cggcggcggaggccggc 620
           |||||||||||||||||
Sbjct: 146 cggcggcggaggccggc 130



>gb|CN821118.1|CN821118 HRO4427_F12_L23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
            leaf Avena sativa cDNA clone HRO4427_F12_L23, mRNA
            sequence
          Length = 799

 Score = 34.2 bits (17), Expect = 0.35
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1132 acaagttctccaaccag 1148
            |||||||||||||||||
Sbjct: 529  acaagttctccaaccag 545



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2967
Number of Sequences: 8143
Number of extensions: 2967
Number of successful extensions: 795
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 792
Number of HSP's gapped (non-prelim): 3
length of query: 1520
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1503
effective length of database: 4,564,032
effective search space: 6859740096
effective search space used: 6859740096
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)