BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969912.2.1
(507 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816615.1|CN816615 HRO4522_H03_O06ZS5 Lib AA071E1X Aven... 34 0.11
dbj|AB000707.1| Avena sativa gene for auxin-binding protein... 34 0.11
gb|CN817788.1|CN817788 HRO4461_A08_B15ZS5 Lib AA070E1X Aven... 32 0.45
gb|CN817837.1|CN817837 HRO4462_G04_N08ZS5 Lib AA070E1X Aven... 32 0.45
>gb|CN816615.1|CN816615 HRO4522_H03_O06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_H03_O06, mRNA sequence
Length = 788
Score = 34.2 bits (17), Expect = 0.11
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 272 gaatcagctgatggtgc 288
|||||||||||||||||
Sbjct: 615 gaatcagctgatggtgc 599
>dbj|AB000707.1| Avena sativa gene for auxin-binding protein, complete cds
Length = 801
Score = 34.2 bits (17), Expect = 0.11
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 137 cgccggcgccggccgcc 153
|||||||||||||||||
Sbjct: 118 cgccggcgccggccgcc 134
>gb|CN817788.1|CN817788 HRO4461_A08_B15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_A08_B15, mRNA sequence
Length = 351
Score = 32.2 bits (16), Expect = 0.45
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 403 ccggcgaggtcgtcga 418
||||||||||||||||
Sbjct: 62 ccggcgaggtcgtcga 77
>gb|CN817837.1|CN817837 HRO4462_G04_N08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_G04_N08, mRNA sequence
Length = 496
Score = 32.2 bits (16), Expect = 0.45
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 76 ccggcgtcctcgaccc 91
||||||||||||||||
Sbjct: 111 ccggcgtcctcgaccc 126
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 908
Number of Sequences: 8143
Number of extensions: 908
Number of successful extensions: 230
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 6
length of query: 507
length of database: 4,702,463
effective HSP length: 16
effective length of query: 491
effective length of database: 4,572,175
effective search space: 2244937925
effective search space used: 2244937925
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)