BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969865.2.1
(675 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818609.1|CN818609 HRO4467_C02_E03ZS5 Lib AA070E1X Aven... 291 4e-079
gb|CN818166.1|CN818166 HRO4471_C12_E23ZS5 Lib AA070E1X Aven... 278 6e-075
>gb|CN818609.1|CN818609 HRO4467_C02_E03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_C02_E03, mRNA sequence
Length = 463
Score = 291 bits (147), Expect = 4e-079
Identities = 207/227 (91%)
Strand = Plus / Plus
Query: 180 caggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgat 239
||||| ||||||||||||||||||||||||||||| ||||| |||||| | || ||||||
Sbjct: 5 caggtgcttatcaactgccggaacaacaagaagttacttggccgcgtgagggcattcgat 64
Query: 240 cggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagacc 299
|| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 65 cgtcactgcaacatggttcttgagaacgttagggagatgtggactgaggtcccaaagact 124
Query: 300 ggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttc 359
|| |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct: 125 ggcaaaggcaagaagaaggctcttccagtgaacaaggacaggttcatcagcaagatgttc 184
Query: 360 ctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||| ||||| || ||||||||||||||||||||||| || |||||
Sbjct: 185 ctccgcggggactctgtcatcattgtcctcaggaacccaaagtgagt 231
>gb|CN818166.1|CN818166 HRO4471_C12_E23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_C12_E23, mRNA sequence
Length = 475
Score = 278 bits (140), Expect = 6e-075
Identities = 200/220 (90%)
Strand = Plus / Plus
Query: 186 cttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatcggcac 245
||||||||||||||||||||||||||||| ||||| |||||| | || || ||||| |||
Sbjct: 2 cttatcaactgccggaacaacaagaagttacttggccgcgtgagggcatttgatcgccac 61
Query: 246 tgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccggtaaa 305
|||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||
Sbjct: 62 tgcaacatggttcttgagaacgttagggagatgtggaccgaggttccaaagactgggaaa 121
Query: 306 ggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctccgt 365
||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct: 122 ggcaagaagaaggctcttcctgtgaacaaggacaggttcatcagcaagatgttcctccgc 181
Query: 366 ggggattcggtcatcattgtcctcaggaacccgaaatgag 405
|| || |||||||||||||| || ||||||||||| ||||
Sbjct: 182 ggagactcggtcatcattgttctgaggaacccgaagtgag 221
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1600
Number of Sequences: 8143
Number of extensions: 1600
Number of successful extensions: 436
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 2
length of query: 675
length of database: 4,702,463
effective HSP length: 16
effective length of query: 659
effective length of database: 4,572,175
effective search space: 3013063325
effective search space used: 3013063325
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)