BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950290.2.2
(867 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821309.1|CN821309 HRO4423_H04_P07ZS5 Lib AA069E1X Aven... 74 2e-013
gb|CN817424.1|CN817424 HRO4465_G08_N15ZS5 Lib AA070E1X Aven... 40 0.003
gb|CN821175.1|CN821175 HRO4428_C12_F24ZS5 Lib AA069E1X Aven... 38 0.013
gb|CN814999.1|CN814999 HRO4504_G06_N12ZS5 Lib AA071E1X Aven... 36 0.050
gb|CN815140.1|CN815140 HRO4506_C10_E20ZS5 Lib AA071E1X Aven... 36 0.050
emb|A47134.1| Sequence 9 from Patent WO9529246 34 0.20
>gb|CN821309.1|CN821309 HRO4423_H04_P07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_H04_P07, mRNA
sequence
Length = 585
Score = 73.8 bits (37), Expect = 2e-013
Identities = 167/209 (79%), Gaps = 6/209 (2%)
Strand = Plus / Minus
Query: 423 acatctgtaggatagcttccaagaactcttaaaaatgttgcaaactcct---tcagattt 479
||||| ||||||||||| ||||||||||||| ||| || |||||||||| ||| ||
Sbjct: 264 acatcagtaggatagctcccaagaactcttagaaaggtagcaaactcctgcttcaagtta 205
Query: 480 ccaagagcattctgagtctttggatcagccattgatgcttcaaggtcaacataaaaaagg 539
|||||||| |||| ||||||||||||||||| || |||| || ||||| || |||
Sbjct: 204 ttcagagcattttgagcatttggatcagccattgacgcctcaaaatctacatagaagagg 145
Query: 540 taatcaaagttctttaagagcgaggaacag---tcatcagatacccgaagaggcctttcc 596
|| || |||| ||| | | ||| ||||||| ||||||| ||| || |||||||||| |
Sbjct: 144 tagtcgaagtgcttcaggggcgtggaacagttatcatcagctacacgtagaggccttttc 85
Query: 597 ttatgtggacgactttcaatctttgtgag 625
|| ||||| |||||||| ||||| |||||
Sbjct: 84 ttgtgtgggcgactttccatcttggtgag 56
>gb|CN817424.1|CN817424 HRO4465_G08_N15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_G08_N15, mRNA sequence
Length = 228
Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 841 gtgccgaatcctgcagcccg 860
||||||||||||||||||||
Sbjct: 20 gtgccgaatcctgcagcccg 1
>gb|CN821175.1|CN821175 HRO4428_C12_F24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_C12_F24, mRNA
sequence
Length = 541
Score = 38.2 bits (19), Expect = 0.013
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 841 gtgccgaatcctgcagccc 859
|||||||||||||||||||
Sbjct: 19 gtgccgaatcctgcagccc 1
>gb|CN814999.1|CN814999 HRO4504_G06_N12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_G06_N12, mRNA sequence
Length = 540
Score = 36.2 bits (18), Expect = 0.050
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 707 cttaaatggtttatcagt 724
||||||||||||||||||
Sbjct: 514 cttaaatggtttatcagt 531
>gb|CN815140.1|CN815140 HRO4506_C10_E20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_C10_E20, mRNA sequence
Length = 580
Score = 36.2 bits (18), Expect = 0.050
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 707 cttaaatggtttatcagt 724
||||||||||||||||||
Sbjct: 516 cttaaatggtttatcagt 533
>emb|A47134.1| Sequence 9 from Patent WO9529246
Length = 1926
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 851 ctgcagcccgggggatc 867
|||||||||||||||||
Sbjct: 1865 ctgcagcccgggggatc 1881
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2181
Number of Sequences: 8143
Number of extensions: 2181
Number of successful extensions: 588
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 7
length of query: 867
length of database: 4,702,463
effective HSP length: 16
effective length of query: 851
effective length of database: 4,572,175
effective search space: 3890920925
effective search space used: 3890920925
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)