BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2950290.2.1
         (1442 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN821309.1|CN821309  HRO4423_H04_P07ZS5 Lib AA069E1X Aven...    74   4e-013
gb|CN814999.1|CN814999  HRO4504_G06_N12ZS5 Lib AA071E1X Aven...    36   0.084
gb|CN815140.1|CN815140  HRO4506_C10_E20ZS5 Lib AA071E1X Aven...    36   0.084

>gb|CN821309.1|CN821309 HRO4423_H04_P07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
            leaf Avena sativa cDNA clone HRO4423_H04_P07, mRNA
            sequence
          Length = 585

 Score = 73.8 bits (37), Expect = 4e-013
 Identities = 167/209 (79%), Gaps = 6/209 (2%)
 Strand = Plus / Plus

                                                                        
Query: 837  ctcacaaagattgaaagtcgtccacataaggaaaggcctcttcgggtatctgatga---c 893
            ||||| ||||| |||||||| ||||| ||| |||||||||| || ||| |||||||   |
Sbjct: 56   ctcaccaagatggaaagtcgcccacacaagaaaaggcctctacgtgtagctgatgataac 115

                                                                        
Query: 894  tgttcctcgctcttaaagaactttgattaccttttttatgttgaccttgaagcatcaatg 953
            |||||| ||| | | ||| |||| || ||||| || ||||| ||  |||| || ||||||
Sbjct: 116  tgttccacgcccctgaagcacttcgactacctcttctatgtagattttgaggcgtcaatg 175

                                                                        
Query: 954  gctgatccaaagactcagaatgctcttggaaatctga---aggagtttgcaacattttta 1010
            |||||||||||  |||| ||||||||    ||  |||   |||||||||| || ||| ||
Sbjct: 176  gctgatccaaatgctcaaaatgctctgaataacttgaagcaggagtttgctacctttcta 235

                                         
Query: 1011 agagttcttggaagctatcctacagatgt 1039
            ||||||||||| ||||||||||| |||||
Sbjct: 236  agagttcttgggagctatcctactgatgt 264



>gb|CN814999.1|CN814999 HRO4504_G06_N12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4504_G06_N12, mRNA sequence
          Length = 540

 Score = 36.2 bits (18), Expect = 0.084
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 738 actgataaaccatttaag 755
           ||||||||||||||||||
Sbjct: 531 actgataaaccatttaag 514



>gb|CN815140.1|CN815140 HRO4506_C10_E20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4506_C10_E20, mRNA sequence
          Length = 580

 Score = 36.2 bits (18), Expect = 0.084
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 738 actgataaaccatttaag 755
           ||||||||||||||||||
Sbjct: 533 actgataaaccatttaag 516



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3389
Number of Sequences: 8143
Number of extensions: 3389
Number of successful extensions: 822
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 818
Number of HSP's gapped (non-prelim): 4
length of query: 1442
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1425
effective length of database: 4,564,032
effective search space: 6503745600
effective search space used: 6503745600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)