BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950160.2.1
(846 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815983.1|CN815983 HRO4515_F02_L03ZS5 Lib AA071E1X Aven... 42 8e-004
gb|CN814825.1|CN814825 HRO4502_H06_O12ZS5 Lib AA071E1X Aven... 40 0.003
gb|CN821264.1|CN821264 HRO4423_D02_H03ZS5 Lib AA069E1X Aven... 40 0.003
gb|CN817070.1|CN817070 HRO4527_H07_P13ZS5 Lib AA071E1X Aven... 34 0.19
gb|CN817549.1|CN817549 HRO4463_G10_M19ZS5 Lib AA070E1X Aven... 34 0.19
>gb|CN815983.1|CN815983 HRO4515_F02_L03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_F02_L03, mRNA sequence
Length = 668
Score = 42.1 bits (21), Expect = 8e-004
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 579 gagccatggcttcatatttccattgtagtgcag 611
|||||| || |||||||| ||||||||||||||
Sbjct: 525 gagccaaggtttcatattgccattgtagtgcag 493
>gb|CN814825.1|CN814825 HRO4502_H06_O12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_H06_O12, mRNA sequence
Length = 837
Score = 40.1 bits (20), Expect = 0.003
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtgcag 611
||||| || |||||||| ||||||||||||||
Sbjct: 461 agccacggtttcatattgccattgtagtgcag 430
>gb|CN821264.1|CN821264 HRO4423_D02_H03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_D02_H03, mRNA
sequence
Length = 733
Score = 40.1 bits (20), Expect = 0.003
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 582 ccatggcttcatatttccattgta 605
||||||||||||||| ||||||||
Sbjct: 474 ccatggcttcatattcccattgta 451
>gb|CN817070.1|CN817070 HRO4527_H07_P13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_H07_P13, mRNA sequence
Length = 603
Score = 34.2 bits (17), Expect = 0.19
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 421 gcagttggagcatgtgc 437
|||||||||||||||||
Sbjct: 169 gcagttggagcatgtgc 153
>gb|CN817549.1|CN817549 HRO4463_G10_M19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_G10_M19, mRNA sequence
Length = 742
Score = 34.2 bits (17), Expect = 0.19
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 505 cactgctgaatcaaagggtgt 525
||||||||||||| |||||||
Sbjct: 21 cactgctgaatcagagggtgt 41
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2344
Number of Sequences: 8143
Number of extensions: 2344
Number of successful extensions: 748
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 7
length of query: 846
length of database: 4,702,463
effective HSP length: 16
effective length of query: 830
effective length of database: 4,572,175
effective search space: 3794905250
effective search space used: 3794905250
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)