BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2950160.2.1
         (846 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815983.1|CN815983  HRO4515_F02_L03ZS5 Lib AA071E1X Aven...    42   8e-004
gb|CN814825.1|CN814825  HRO4502_H06_O12ZS5 Lib AA071E1X Aven...    40   0.003
gb|CN821264.1|CN821264  HRO4423_D02_H03ZS5 Lib AA069E1X Aven...    40   0.003
gb|CN817070.1|CN817070  HRO4527_H07_P13ZS5 Lib AA071E1X Aven...    34   0.19 
gb|CN817549.1|CN817549  HRO4463_G10_M19ZS5 Lib AA070E1X Aven...    34   0.19 
>gb|CN815983.1|CN815983 HRO4515_F02_L03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4515_F02_L03, mRNA sequence
          Length = 668

 Score = 42.1 bits (21), Expect = 8e-004
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 579 gagccatggcttcatatttccattgtagtgcag 611
           |||||| || |||||||| ||||||||||||||
Sbjct: 525 gagccaaggtttcatattgccattgtagtgcag 493
>gb|CN814825.1|CN814825 HRO4502_H06_O12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4502_H06_O12, mRNA sequence
          Length = 837

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 580 agccatggcttcatatttccattgtagtgcag 611
           ||||| || |||||||| ||||||||||||||
Sbjct: 461 agccacggtttcatattgccattgtagtgcag 430
>gb|CN821264.1|CN821264 HRO4423_D02_H03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4423_D02_H03, mRNA
           sequence
          Length = 733

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 582 ccatggcttcatatttccattgta 605
           ||||||||||||||| ||||||||
Sbjct: 474 ccatggcttcatattcccattgta 451
>gb|CN817070.1|CN817070 HRO4527_H07_P13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4527_H07_P13, mRNA sequence
          Length = 603

 Score = 34.2 bits (17), Expect = 0.19
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 421 gcagttggagcatgtgc 437
           |||||||||||||||||
Sbjct: 169 gcagttggagcatgtgc 153
>gb|CN817549.1|CN817549 HRO4463_G10_M19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4463_G10_M19, mRNA sequence
          Length = 742

 Score = 34.2 bits (17), Expect = 0.19
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 505 cactgctgaatcaaagggtgt 525
           ||||||||||||| |||||||
Sbjct: 21  cactgctgaatcagagggtgt 41
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2344
Number of Sequences: 8143
Number of extensions: 2344
Number of successful extensions: 748
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 7
length of query: 846
length of database: 4,702,463
effective HSP length: 16
effective length of query: 830
effective length of database: 4,572,175
effective search space: 3794905250
effective search space used: 3794905250
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)