BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.3
(824 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818433.1|CN818433 HRO4460_F10_K20ZS5 Lib AA070E1X Aven... 228 6e-060
gb|CN819616.1|CN819616 HRO4402_B12_C24ZS5 Lib AA069E1X Aven... 204 9e-053
gb|CN821498.1|CN821498 HRO4426_A05_A10ZS5 Lib AA069E1X Aven... 204 9e-053
gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, ... 38 0.012
>gb|CN818433.1|CN818433 HRO4460_F10_K20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_F10_K20, mRNA sequence
Length = 787
Score = 228 bits (115), Expect = 6e-060
Identities = 255/305 (83%)
Strand = Plus / Minus
Query: 233 taccatatgttnactatttggcggttcacaaacattggccgnnnaaaatggtcgtaaaca 292
||||| ||||| ||||||||||| |||| |||||||||||| |||||| |||||||||
Sbjct: 320 taccagatgtttactatttggcgattcaaaaacattggccgcacaaaatgctcgtaaaca 261
Query: 293 taggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagctttgcatac 352
|| |||| ||||||||| ||||| || || | |||| || ||||||| |||| ||||
Sbjct: 260 taagcagcaccattgaagcaaggtaaaactagccagcaattgaagaacaactttccatag 201
Query: 353 gaccaaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaat 412
| ||| || |||||||| || | ||||||||||| || |||||||||||||||||||||
Sbjct: 200 ggccagaaaggaagccattcaagtattggagcaaatgtgagctcaaacaaagtgataaat 141
Query: 413 gagtnnnacacccagtaagtgagccactgctgatcatctacaggattttttgtctctata 472
|||| |||||||||||||||||||||||||||||||||| || |||||| || ||
Sbjct: 140 gagtacaacacccagtaagtgagccactgctgatcatctacttgagattttgtttcaatt 81
Query: 473 gctctaacagaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcg 532
||||| ||||| |||||||||||||||||||| || | ||||||||||| |||| |||
Sbjct: 80 gctctcacagaggcatatagaggataagcaagcgaaactagtggcccggcgaggatgtcg 21
Query: 533 aagtt 537
|||||
Sbjct: 20 aagtt 16
>gb|CN819616.1|CN819616 HRO4402_B12_C24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_B12_C24, mRNA
sequence
Length = 769
Score = 204 bits (103), Expect = 9e-053
Identities = 282/345 (81%)
Strand = Plus / Minus
Query: 229 aatataccatatgttnactatttggcggttcacaaacattggccgnnnaaaatggtcgta 288
||||||||| ||||| |||| ||| ||||||||| ||||||||| |||||| || ||
Sbjct: 392 aatataccagatgtttactacttgctggttcacaatcattggccgcacaaaatgctcata 333
Query: 289 aacataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagctttgc 348
||||| |||| ||||||||| | ||||||||||| |||| || || ||||||||| |
Sbjct: 332 aacatgcgcagcaccattgaagtagggcaagaccaaccagcaattgaaaaacagctttcc 273
Query: 349 atacgaccaaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgat 408
||| ||||| || |||||||| || || | || |||||| || |||||||||| ||||||
Sbjct: 272 ataagaccagaagggaagccattctattactgcagcaaaggtaagctcaaacagagtgat 213
Query: 409 aaatgagtnnnacacccagtaagtgagccactgctgatcatctacaggattttttgtctc 468
||| |||| |||||||||| |||||||| ||||||||||||| || | |||||| ||
Sbjct: 212 aaacgagtacaacacccagtatgtgagccattgctgatcatctatagaagattttgtttc 153
Query: 469 tatagctctaacagaagcatatagaggataagcaagtgatatgagtggcccggcaaggac 528
||| |||| |||||| ||||||||||||||||| ||||| | | ||||| || || ||
Sbjct: 152 tattgctcgaacagacgcatatagaggataagcgagtgaaactatgggccccgcgagaac 93
Query: 529 atcgaagttattggccagcaccttgaggaaagatccggaccccat 573
||||| ||| || |||||||||||||||| ||||| ||||||||
Sbjct: 92 atcgaggttgctgaccagcaccttgaggaaggatccagaccccat 48
>gb|CN821498.1|CN821498 HRO4426_A05_A10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_A05_A10, mRNA
sequence
Length = 839
Score = 204 bits (103), Expect = 9e-053
Identities = 282/345 (81%)
Strand = Plus / Minus
Query: 229 aatataccatatgttnactatttggcggttcacaaacattggccgnnnaaaatggtcgta 288
||||||||| ||||| |||| ||| ||||||||| ||||||||| |||||| || ||
Sbjct: 386 aatataccagatgtttactacttgctggttcacaatcattggccgcacaaaatgctcata 327
Query: 289 aacataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagctttgc 348
||||| |||| ||||||||| | ||||||||||| |||| || || ||||||||| |
Sbjct: 326 aacatgcgcagcaccattgaagtagggcaagaccaaccagcaattgaaaaacagctttcc 267
Query: 349 atacgaccaaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgat 408
||| ||||| || |||||||| || || | || |||||| || |||||||||| ||||||
Sbjct: 266 ataagaccagaagggaagccattctattactgcagcaaaggtaagctcaaacagagtgat 207
Query: 409 aaatgagtnnnacacccagtaagtgagccactgctgatcatctacaggattttttgtctc 468
||| |||| |||||||||| |||||||| ||||||||||||| || | |||||| ||
Sbjct: 206 aaacgagtacaacacccagtatgtgagccattgctgatcatctatagaagattttgtttc 147
Query: 469 tatagctctaacagaagcatatagaggataagcaagtgatatgagtggcccggcaaggac 528
||| |||| |||||| ||||||||||||||||| ||||| | | ||||| || || ||
Sbjct: 146 tattgctcgaacagacgcatatagaggataagcgagtgaaactatgggccccgcgagaac 87
Query: 529 atcgaagttattggccagcaccttgaggaaagatccggaccccat 573
||||| ||| || |||||||||||||||| ||||| ||||||||
Sbjct: 86 atcgaggttgctgaccagcaccttgaggaaggatccagaccccat 42
>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
Length = 571
Score = 38.2 bits (19), Expect = 0.012
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 806 tacctgcccgggcggccgc 824
|||||||||||||||||||
Sbjct: 23 tacctgcccgggcggccgc 5
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1305
Number of Sequences: 8143
Number of extensions: 1305
Number of successful extensions: 309
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 6
length of query: 824
length of database: 4,702,463
effective HSP length: 16
effective length of query: 808
effective length of database: 4,572,175
effective search space: 3694317400
effective search space used: 3694317400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)