BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.2
(1044 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818433.1|CN818433 HRO4460_F10_K20ZS5 Lib AA070E1X Aven... 375 e-104
gb|CN819616.1|CN819616 HRO4402_B12_C24ZS5 Lib AA069E1X Aven... 268 9e-072
gb|CN821498.1|CN821498 HRO4426_A05_A10ZS5 Lib AA069E1X Aven... 268 9e-072
>gb|CN818433.1|CN818433 HRO4460_F10_K20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_F10_K20, mRNA sequence
Length = 787
Score = 375 bits (189), Expect = e-104
Identities = 369/429 (86%)
Strand = Plus / Plus
Query: 136 caagaacttcgatgtccttgccgggccactcatatcacttgcttatcctctatatgcttc 195
|||||||||||| |||| ||||||||||| | || |||||||||||||||||||| ||
Sbjct: 12 caagaacttcgacatcctcgccgggccactagtttcgcttgcttatcctctatatgcctc 71
Query: 196 tgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcacttactgggt 255
||| |||||||| || |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 72 tgtgagagcaattgaaacaaaatctcaagtagatgatcagcagtggctcacttactgggt 131
Query: 256 gttgtactcatttatcactttgtttgagctaacttttgctccaattatcgagtggcttcc 315
|||||||||||||||||||||||||||||| || ||||||||||| | || ||||||||
Sbjct: 132 gttgtactcatttatcactttgtttgagctcacatttgctccaatacttgaatggcttcc 191
Query: 316 attttggtcatatgcaaagctgttctttaactgctggttggtcttgccttggttcaatgg 375
|| ||| | |||| |||| ||||||| || |||||| | || || ||||| ||||||||
Sbjct: 192 tttctggccctatggaaagttgttcttcaattgctggctagttttaccttgcttcaatgg 251
Query: 376 tgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaatagtgaa 435
|||||| ||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||
Sbjct: 252 tgctgcttatgtttacgagcattttgtgcggccaatgtttttgaatcgccaaatagtaaa 311
Query: 436 catatggtatattccaagaaatgagaagctaggtaaatctgatgatgttctgtcagctgc 495
||| ||||| | |||||||| || ||| | ||||| |||||||||| || ||||||||
Sbjct: 312 catctggtacgtcccaagaaaggataagtcaagtaaacctgatgatgtactctcagctgc 371
Query: 496 agagagatatattgaacaaaacggaccagaagcatttgagaagctcatcagcaagtctac 555
||||| |||||||||| || ||||||||||||||||||||||| || |||||||||||
Sbjct: 372 agagaagtatattgaactgaatggaccagaagcatttgagaagctaattagcaagtctac 431
Query: 556 gaagtcttc 564
||| ||||
Sbjct: 432 aaagccttc 440
Score = 46.1 bits (23), Expect = 6e-005
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 626 gccgagagagaatcgtggggcgaaaatcccttcta 660
|||||||||||||| ||||| |||||||| |||||
Sbjct: 502 gccgagagagaatcctggggtgaaaatccattcta 536
>gb|CN819616.1|CN819616 HRO4402_B12_C24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_B12_C24, mRNA
sequence
Length = 769
Score = 268 bits (135), Expect = 9e-072
Identities = 294/347 (84%)
Strand = Plus / Plus
Query: 104 atggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcca 163
|||||||| ||||| |||||||||||||||| || ||| ||||||| || || |||||
Sbjct: 48 atggggtctggatccttcctcaaggtgctggtcagcaacctcgatgttctcgcggggccc 107
Query: 164 ctcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcct 223
| | ||||| ||||||||||||||||| |||||| |||||||||| |||||| | ||
Sbjct: 108 atagtttcactcgcttatcctctatatgcgtctgttcgagcaatagaaacaaaatcttct 167
Query: 224 gtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttgag 283
||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||
Sbjct: 168 atagatgatcagcaatggctcacatactgggtgttgtactcgtttatcactctgtttgag 227
Query: 284 ctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttcttt 343
|| || |||||| || | || || |||||||| || ||||| |||| ||||||||| ||
Sbjct: 228 cttacctttgctgcagtaatagaatggcttcccttctggtcttatggaaagctgtttttc 287
Query: 344 aactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttgtg 403
|| ||||||||||||||||| | |||||||||||||| ||||||| || |||||||||
Sbjct: 288 aattgctggttggtcttgccctacttcaatggtgctgcgcatgtttatgagcattttgtg 347
Query: 404 cggccaatgtttgtgaaccgccaaatagtgaacatatggtatattcc 450
||||||||| ||||||||| ||| |||| ||||| |||||||||||
Sbjct: 348 cggccaatgattgtgaaccagcaagtagtaaacatctggtatattcc 394
>gb|CN821498.1|CN821498 HRO4426_A05_A10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_A05_A10, mRNA
sequence
Length = 839
Score = 268 bits (135), Expect = 9e-072
Identities = 294/347 (84%)
Strand = Plus / Plus
Query: 104 atggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcca 163
|||||||| ||||| |||||||||||||||| || ||| ||||||| || || |||||
Sbjct: 42 atggggtctggatccttcctcaaggtgctggtcagcaacctcgatgttctcgcggggccc 101
Query: 164 ctcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcct 223
| | ||||| ||||||||||||||||| |||||| |||||||||| |||||| | ||
Sbjct: 102 atagtttcactcgcttatcctctatatgcgtctgttcgagcaatagaaacaaaatcttct 161
Query: 224 gtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttgag 283
||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||
Sbjct: 162 atagatgatcagcaatggctcacatactgggtgttgtactcgtttatcactctgtttgag 221
Query: 284 ctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctgttcttt 343
|| || |||||| || | || || |||||||| || ||||| |||| ||||||||| ||
Sbjct: 222 cttacctttgctgcagtaatagaatggcttcccttctggtcttatggaaagctgtttttc 281
Query: 344 aactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgaccattttgtg 403
|| ||||||||||||||||| | |||||||||||||| ||||||| || |||||||||
Sbjct: 282 aattgctggttggtcttgccctacttcaatggtgctgcgcatgtttatgagcattttgtg 341
Query: 404 cggccaatgtttgtgaaccgccaaatagtgaacatatggtatattcc 450
||||||||| ||||||||| ||| |||| ||||| |||||||||||
Sbjct: 342 cggccaatgattgtgaaccagcaagtagtaaacatctggtatattcc 388
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2775
Number of Sequences: 8143
Number of extensions: 2775
Number of successful extensions: 819
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 6
length of query: 1044
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1028
effective length of database: 4,572,175
effective search space: 4700195900
effective search space used: 4700195900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)