BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943819.2.1
(1121 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|Z48431.1|AFABF2 A.fatua mRNA for DNA-binding protein (c... 42 0.001
gb|CN817522.1|CN817522 HRO4463_H11_O21ZS5 Lib AA070E1X Aven... 34 0.26
gb|CN820983.1|CN820983 HRO4422_B10_C20ZS5 Lib AA069E1X Aven... 34 0.26
emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein 34 0.26
>emb|Z48431.1|AFABF2 A.fatua mRNA for DNA-binding protein (clone ABF2)
Length = 1283
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 664 ctgctgctgctgcggcggcgg 684
|||||||||||||||||||||
Sbjct: 968 ctgctgctgctgcggcggcgg 948
Score = 34.2 bits (17), Expect = 0.26
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 666 gctgctgctgcggcggcggcg 686
||||||||||| |||||||||
Sbjct: 969 gctgctgctgctgcggcggcg 949
>gb|CN817522.1|CN817522 HRO4463_H11_O21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_H11_O21, mRNA sequence
Length = 832
Score = 34.2 bits (17), Expect = 0.26
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 760 cgatgcccctgcccagcagct 780
||||||||| |||||||||||
Sbjct: 651 cgatgccccggcccagcagct 671
>gb|CN820983.1|CN820983 HRO4422_B10_C20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_B10_C20, mRNA
sequence
Length = 726
Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 669 gctgctgcggcggcggc 685
|||||||||||||||||
Sbjct: 101 gctgctgcggcggcggc 85
>emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein
Length = 2287
Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 963 cggcagctcttgccgca 979
|||||||||||||||||
Sbjct: 510 cggcagctcttgccgca 494
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3343
Number of Sequences: 8143
Number of extensions: 3343
Number of successful extensions: 1216
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1203
Number of HSP's gapped (non-prelim): 13
length of query: 1121
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1105
effective length of database: 4,572,175
effective search space: 5052253375
effective search space used: 5052253375
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)