BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2922138.2.1
(1095 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816389.1|CN816389 HRO4520_B08_D16ZS5 Lib AA071E1X Aven... 135 9e-032
gb|CN820431.1|CN820431 HRO4419_C08_F15ZS5 Lib AA069E1X Aven... 127 2e-029
gb|CN818485.1|CN818485 HRO4460_C01_E02ZS5 Lib AA070E1X Aven... 111 1e-024
gb|CN821538.1|CN821538 HRO4426_D11_G22ZS5 Lib AA069E1X Aven... 90 5e-018
gb|CN821230.1|CN821230 HRO4423_A01_B01ZS5 Lib AA069E1X Aven... 54 3e-007
gb|CN817371.1|CN817371 HRO4465_D08_H15ZS5 Lib AA070E1X Aven... 34 0.25
gb|CN818864.1|CN818864 HRO4473_E07_XXXZS5 Lib AA070E1X Aven... 34 0.25
gb|CN819178.1|CN819178 HRO4451_A10_A19ZS5 Lib AA070E1X Aven... 34 0.25
gb|CN820588.1|CN820588 HRO4415_B09_D17ZS5 Lib AA069E1X Aven... 34 0.25
>gb|CN816389.1|CN816389 HRO4520_B08_D16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_B08_D16, mRNA sequence
Length = 551
Score = 135 bits (68), Expect = 9e-032
Identities = 233/288 (80%)
Strand = Plus / Plus
Query: 537 gagttggcaaaagctcatgagatccaggctgctgtgctgttgcacccttcttttgttacc 596
||||| || |||||| ||||||||||||| ||||| ||| ||||||||| ||||||||
Sbjct: 14 gagttagcgaaagctaatgagatccaggcagctgttatgtcgcacccttcatttgttact 73
Query: 597 gttgacgatatcaaagaggtcaagtgcgcaatttctatcctcggagctgagattgacaaa 656
||||| |||||||||||||| || || | || || | || |||||||| | ||||| |
Sbjct: 74 gttgatgatatcaaagaggttaaatgtcccatcgctgtacttggagctgaaactgacaga 133
Query: 657 atgtccccaccggagctaatcaagcagttcgagcaggtcctttctttgaactcaggggtt 716
| |||||| || || | ||||||||||||| ||||| || || | ||||||| | ||
Sbjct: 134 acgtccccgccagaattggtcaagcagttcgaacaggttctatcctctaactcagagatt 193
Query: 717 ggccacttcgtcaagatcttccctggtgtggcgcatggatggagcgtgagatacaaccac 776
|| ||||||||||||| |||||||| ||| | |||||||||| || |||||| || |
Sbjct: 194 ggttacttcgtcaagattttccctggggtgtctcatggatggactgtcagatacgacagc 253
Query: 777 gacgacgcagctgccgtgaagagtgctgaggaagcctttgcggacatg 824
|||||||| ||||| |||||||| |||||||||||||| ||||||||
Sbjct: 254 gacgacgcggctgctgtgaagagcgctgaggaagccttgacggacatg 301
>gb|CN820431.1|CN820431 HRO4419_C08_F15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_C08_F15, mRNA
sequence
Length = 560
Score = 127 bits (64), Expect = 2e-029
Identities = 235/292 (80%)
Strand = Plus / Plus
Query: 553 atgagatccaggctgctgtgctgttgcacccttcttttgttaccgttgacgatatcaaag 612
||||||||||||| ||||| ||| |||||||||||||||||| ||||| ||||||||||
Sbjct: 29 atgagatccaggcagctgttatgtcgcacccttcttttgttactgttgatgatatcaaag 88
Query: 613 aggtcaagtgcgcaatttctatcctcggagctgagattgacaaaatgtccccaccggagc 672
|||| || ||| | || |||| || |||||||| | |||| ||||| ||||| ||
Sbjct: 89 aggtgaaatgccccatcgctatacttggagctgaaactgacgtgatgtcgccaccagaat 148
Query: 673 taatcaagcagttcgagcaggtcctttctttgaactcaggggttggccacttcgtcaaga 732
| ||||||||||| ||||||| || || | ||| ||||| |||| ||| |||||||
Sbjct: 149 tggtcaagcagttcaagcaggttctatcctctaacgcagggattggttcctttgtcaaga 208
Query: 733 tcttccctggtgtggcgcatggatggagcgtgagatacaaccacgacgacgcagctgccg 792
| ||||| || || | ||||| |||| ||||||||| || | |||||||||||||||
Sbjct: 209 ttttcccgggggtttctcatggttggactgtgagatacgacagcaacgacgcagctgccg 268
Query: 793 tgaagagtgctgaggaagcctttgcggacatgctcgactggttcaacaagaa 844
|||||| |||||||||||| | ||||||||| |||| ||||| ||||||||
Sbjct: 269 tgaagaacgctgaggaagccctggcggacatgatcgaatggtttaacaagaa 320
>gb|CN818485.1|CN818485 HRO4460_C01_E02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_C01_E02, mRNA sequence
Length = 674
Score = 111 bits (56), Expect = 1e-024
Identities = 233/292 (79%)
Strand = Plus / Plus
Query: 496 ttggagctgcagggtattgctggggtgcaaaggttgttgtggagttggcaaaagctcatg 555
|||| |||||||| |||||||||||||| |||| ||||| || ||||||||||||| ||
Sbjct: 143 ttggggctgcaggttattgctggggtgcgaagggcgttgtagacttggcaaaagctcgtg 202
Query: 556 agatccaggctgctgtgctgttgcacccttcttttgttaccgttgacgatatcaaagagg 615
|||| || || ||||| ||||||| |||||| | || | || || |||||||||||||
Sbjct: 203 agatacacgcggctgtaatgttgcatccttctcgtattccagtcgatgatatcaaagagg 262
Query: 616 tcaagtgcgcaatttctatcctcggagctgagattgacaaaatgtccccaccggagctaa 675
| || || |||| |||| || |||||||| |||||| | | ||||| || || || |
Sbjct: 263 tgaaatgtccaatcgctatacttggagctgaaattgaccagacttcccctccagaactga 322
Query: 676 tcaagcagttcgagcaggtcctttctttgaactcaggggttggccacttcgtcaagatct 735
||||| ||||||||||| | ||||| | || |||||| || ||||||||||||||||
Sbjct: 323 tcaaggagttcgagcagattctttcctctaattcagggattaatcacttcgtcaagatct 382
Query: 736 tccctggtgtggcgcatggatggagcgtgagatacaaccacgacgacgcagc 787
||||||| || | |||||||||| ||||||||||| |||| || |||||
Sbjct: 383 tccctggagtttctcatggatggactatgagatacaacaacgatgatgcagc 434
Score = 34.2 bits (17), Expect = 0.25
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 366 ggggatccttatgcacctgagaatg 390
|||||||| ||||||||||| ||||
Sbjct: 13 ggggatccatatgcacctgaaaatg 37
>gb|CN821538.1|CN821538 HRO4426_D11_G22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_D11_G22, mRNA
sequence
Length = 681
Score = 89.7 bits (45), Expect = 5e-018
Identities = 154/189 (81%), Gaps = 1/189 (0%)
Strand = Plus / Plus
Query: 429 ccggaaaaagggtttgaagagacaaaacaagttattggggctctaaaggagaagggagtg 488
|||||||| || |||||| || |||||| |||||| ||||| |||||| | ||||||
Sbjct: 120 ccggaaaagggatttgaaaaggcaaaacctgttatttctgctctgaaggagcaaggagtg 179
Query: 489 tctgctgttggagctgcagggtattgctggggtgcaaaggttgttgtggagttggcaaaa 548
||| |||||| |||||| | |||||||||||||| ||||| ||| || || || |||
Sbjct: 180 tctagtgttggcgctgcatgctattgctggggtgccaaggtaattgcagacttagcgaaa 239
Query: 549 gctcatgagatccaggctgctgtgctgttgcacc-cttcttttgttaccgttgacgatat 607
| ||||||||||||| ||||| ||||||||| ||||||||||||| ||||| || ||
Sbjct: 240 agtaatgagatccaggcagctgttatgttgcaccacttcttttgttactgttgatgacat 299
Query: 608 caaagaggt 616
|||||||||
Sbjct: 300 caaagaggt 308
Score = 81.8 bits (41), Expect = 1e-015
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 321 gttgcttcgtcagggtactttgttgtggtaccagatttctttcatggggatcc 373
||||||||||| ||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 11 gttgcttcgtctgggtactttgttgtggtgccagatttctttaatggggatcc 63
>gb|CN821230.1|CN821230 HRO4423_A01_B01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_A01_B01, mRNA
sequence
Length = 296
Score = 54.0 bits (27), Expect = 3e-007
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 778 acgacgcagctgccgtgaagagtgctgaggaagcctttgcggacatgctcgactggttca 837
||||||||||||| ||||||| |||||||||||| | || |||||| | || ||||| |
Sbjct: 35 acgacgcagctgctgtgaagaacgctgaggaagccctggcagacatgattgaatggttta 94
Query: 838 acaagaa 844
|||||||
Sbjct: 95 acaagaa 101
>gb|CN817371.1|CN817371 HRO4465_D08_H15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_D08_H15, mRNA sequence
Length = 836
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 833 gttcaacaagaatctga 849
|||||||||||||||||
Sbjct: 620 gttcaacaagaatctga 636
>gb|CN818864.1|CN818864 HRO4473_E07_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_E07_XXX, mRNA sequence
Length = 597
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 833 gttcaacaagaatctga 849
|||||||||||||||||
Sbjct: 314 gttcaacaagaatctga 330
>gb|CN819178.1|CN819178 HRO4451_A10_A19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_A10_A19, mRNA sequence
Length = 829
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 833 gttcaacaagaatctga 849
|||||||||||||||||
Sbjct: 586 gttcaacaagaatctga 602
>gb|CN820588.1|CN820588 HRO4415_B09_D17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_B09_D17, mRNA
sequence
Length = 661
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 92 accacgagtccacgacc 108
|||||||||||||||||
Sbjct: 507 accacgagtccacgacc 523
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2599
Number of Sequences: 8143
Number of extensions: 2599
Number of successful extensions: 896
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 15
length of query: 1095
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1079
effective length of database: 4,572,175
effective search space: 4933376825
effective search space used: 4933376825
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)