BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2907809.2.1
(614 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815299.1|CN815299 HRO4508_B07_D14ZS5 Lib AA071E1X Aven... 210 1e-054
gb|CN814648.1|CN814648 HRO4501_A03_A05ZS5 Lib AA071E1X Aven... 182 2e-046
gb|CN816820.1|CN816820 HRO4525_B10_C19ZS5 Lib AA071E1X Aven... 182 2e-046
gb|CN815018.1|CN815018 HRO4505_A01_A01ZS5 Lib AA071E1X Aven... 178 4e-045
gb|CN820796.1|CN820796 HRO4420_A02_B04ZS5 Lib AA069E1X Aven... 174 6e-044
gb|CN821631.1|CN821631 HRO4408_E02_J04ZS5 Lib AA069E1X Aven... 151 9e-037
gb|CN820713.1|CN820713 HRO4416_G01_N02ZS5 Lib AA069E1X Aven... 137 1e-032
gb|CN819298.1|CN819298 HRO4452_D02_G04ZS5 Lib AA070E1X Aven... 100 3e-021
gb|CN819308.1|CN819308 HRO4452_E01_I02ZS5 Lib AA070E1X Aven... 64 2e-010
gb|CN815802.1|CN815802 HRO4510_F07_K14ZS5 Lib AA071E1X Aven... 34 0.14
gb|CN819418.1|CN819418 HRO4405_G08_M15ZS5 Lib AA069E1X Aven... 34 0.14
>gb|CN815299.1|CN815299 HRO4508_B07_D14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_B07_D14, mRNA sequence
Length = 470
Score = 210 bits (106), Expect = 1e-054
Identities = 184/210 (87%)
Strand = Plus / Plus
Query: 142 cagaagtccaagatggcgcgcgagaggaacgccgagaagaacaagggcggcaaaggcagc 201
|||||||||||||||||| | ||||||||| ||||||| |||||||| || || ||
Sbjct: 7 cagaagtccaagatggcgagggagaggaacctcgagaagcttaagggcggaaaggggagt 66
Query: 202 cagctggaggccaacaagaaggccatgaacatccagtgcaagatctgcatgcagaccttc 261
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 67 cagctcgaggccaacaagaaggccatgaacatccagtgcaagatatgcatgcagacattc 126
Query: 262 atctgcaccacctccgaggccaagtgcaaagaacatgcggaggcgaggcatcccaagaac 321
|||||||||||||| || || |||||||| |||||||| ||||||| |||||| |||| |
Sbjct: 127 atctgcaccacctctgaagcaaagtgcaaggaacatgctgaggcgaagcatccaaagagc 186
Query: 322 gacctctaccagtgcttcccccacctcaag 351
|| ||| |||||| |||||||||||||||
Sbjct: 187 gaactcgtccagtgtttcccccacctcaag 216
>gb|CN814648.1|CN814648 HRO4501_A03_A05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_A03_A05, mRNA sequence
Length = 391
Score = 182 bits (92), Expect = 2e-046
Identities = 149/168 (88%)
Strand = Plus / Plus
Query: 184 aagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgcaag 243
|||||||| || || || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 28 aagggcggaaaggggagtcagctcgaggccaacaagaaggccatgaacatccagtgcaag 87
Query: 244 atctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcggag 303
|| ||||||||||| ||||||||||||||||| || || |||||||| |||||||| |||
Sbjct: 88 atatgcatgcagacattcatctgcaccacctctgaagcaaagtgcaaggaacatgctgag 147
Query: 304 gcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaag 351
|||| |||||| |||| ||| ||| |||||| |||||||||||||||
Sbjct: 148 gcgaagcatccaaagagcgaactcgtccagtgtttcccccacctcaag 195
>gb|CN816820.1|CN816820 HRO4525_B10_C19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_B10_C19, mRNA sequence
Length = 416
Score = 182 bits (92), Expect = 2e-046
Identities = 149/168 (88%)
Strand = Plus / Plus
Query: 184 aagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgcaag 243
|||||||| || || || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 17 aagggcggaaaggggagtcagctcgaggccaacaagaaggccatgaacatccagtgcaag 76
Query: 244 atctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcggag 303
|| ||||||||||| ||||||||||||||||| || || |||||||| |||||||| |||
Sbjct: 77 atatgcatgcagacattcatctgcaccacctctgaagcaaagtgcaaggaacatgctgag 136
Query: 304 gcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaag 351
|||| |||||| |||| ||| ||| |||||| |||||||||||||||
Sbjct: 137 gcgaagcatccaaagagcgaactcgtccagtgtttcccccacctcaag 184
>gb|CN815018.1|CN815018 HRO4505_A01_A01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_A01_A01, mRNA sequence
Length = 338
Score = 178 bits (90), Expect = 4e-045
Identities = 135/150 (90%)
Strand = Plus / Plus
Query: 202 cagctggaggccaacaagaaggccatgaacatccagtgcaagatctgcatgcagaccttc 261
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 13 cagctcgaggccaacaagaaggccatgaacatccagtgcaagatatgcatgcagacattc 72
Query: 262 atctgcaccacctccgaggccaagtgcaaagaacatgcggaggcgaggcatcccaagaac 321
|||||||||||||| || || |||||||| |||||||| ||||||| |||||| |||| |
Sbjct: 73 atctgcaccacctctgaagcaaagtgcaaggaacatgctgaggcgaagcatccaaagagc 132
Query: 322 gacctctaccagtgcttcccccacctcaag 351
|| ||| |||||| |||||||||||||||
Sbjct: 133 gaactcgtccagtgtttcccccacctcaag 162
>gb|CN820796.1|CN820796 HRO4420_A02_B04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_A02_B04, mRNA
sequence
Length = 417
Score = 174 bits (88), Expect = 6e-044
Identities = 148/168 (88%)
Strand = Plus / Plus
Query: 184 aagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgcaag 243
|||||||| || || || ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3 aagggcggaaaggggagtcagctctaggccaacaagaaggccatgaacatccagtgcaag 62
Query: 244 atctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcggag 303
|| ||||||||||| ||||||||||||||||| || || |||||||| |||||||| |||
Sbjct: 63 atatgcatgcagacattcatctgcaccacctctgaagcaaagtgcaaggaacatgctgag 122
Query: 304 gcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaag 351
|||| |||||| |||| ||| ||| |||||| |||||||||||||||
Sbjct: 123 gcgaagcatccaaagagcgaactcgtccagtgtttcccccacctcaag 170
>gb|CN821631.1|CN821631 HRO4408_E02_J04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_E02_J04, mRNA
sequence
Length = 357
Score = 151 bits (76), Expect = 9e-037
Identities = 121/136 (88%)
Strand = Plus / Plus
Query: 216 caagaaggccatgaacatccagtgcaagatctgcatgcagaccttcatctgcaccacctc 275
||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 11 caagaaggccatgtacatccagtgcaagatatgcatgcagacattcatctgcaccacctc 70
Query: 276 cgaggccaagtgcaaagaacatgcggaggcgaggcatcccaagaacgacctctaccagtg 335
|| || |||||||| |||||||| ||||||| |||||| |||| ||| ||| ||||||
Sbjct: 71 tgaagcaaagtgcaaggaacatgctgaggcgaagcatccaaagagcgaactcgtccagtg 130
Query: 336 cttcccccacctcaag 351
|||||||||||||||
Sbjct: 131 tttcccccacctcaag 146
>gb|CN820713.1|CN820713 HRO4416_G01_N02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_G01_N02, mRNA
sequence
Length = 454
Score = 137 bits (69), Expect = 1e-032
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 227 tgaacatccagtgcaagatctgcatgcagaccttcatctgcaccacctccgaggccaagt 286
||||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||
Sbjct: 11 tgaacatccagtgcaagatatgcatgcagacattcatctgcaccacctctgaagcaaagt 70
Query: 287 gcaaagaacatgcggaggcgaggcatcccaagaacgacctctaccagtgcttcccccacc 346
|||| |||||||| ||||||| |||||| |||| ||| ||| |||||| ||||||||||
Sbjct: 71 gcaaggaacatgctgaggcgaagcatccaaagagcgaactcgtccagtgtttcccccacc 130
Query: 347 tcaag 351
|||||
Sbjct: 131 tcaag 135
>gb|CN819298.1|CN819298 HRO4452_D02_G04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_D02_G04, mRNA sequence
Length = 336
Score = 99.6 bits (50), Expect = 3e-021
Identities = 102/118 (86%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 234 ccagtgcaagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaaga 293
||||||||||| ||||||||||| ||||||||||||||||| || || |||||||| ||
Sbjct: 1 ccagtgcaagaa-tgcatgcagacattcatctgcaccacctctgaagcaaagtgcaagga 59
Query: 294 acatgcggaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaag 351
|||||| ||||||| |||||| |||| || ||| |||||| |||||||||||||||
Sbjct: 60 acatgccgaggcgaagcatccaaagagtgaactcgtccagtgtttcccccacctcaag 117
>gb|CN819308.1|CN819308 HRO4452_E01_I02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_E01_I02, mRNA sequence
Length = 376
Score = 63.9 bits (32), Expect = 2e-010
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 284 agtgcaaagaacatgcggaggcgaggcatcccaagaacgacctctaccagtgcttccccc 343
||||||| |||||||| ||||||| |||||| |||| ||| ||| |||||| |||||||
Sbjct: 25 agtgcaaggaacatgctgaggcgaagcatccaaagagcgaactcgtccagtgtttccccc 84
Query: 344 acctcaag 351
||||||||
Sbjct: 85 acctcaag 92
>gb|CN815802.1|CN815802 HRO4510_F07_K14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_F07_K14, mRNA sequence
Length = 513
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 576 ttgctcaatattttctt 592
|||||||||||||||||
Sbjct: 130 ttgctcaatattttctt 114
>gb|CN819418.1|CN819418 HRO4405_G08_M15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_G08_M15, mRNA
sequence
Length = 669
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 281 ccaagtgcaaagaacat 297
|||||||||||||||||
Sbjct: 616 ccaagtgcaaagaacat 600
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1479
Number of Sequences: 8143
Number of extensions: 1479
Number of successful extensions: 422
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 17
length of query: 614
length of database: 4,702,463
effective HSP length: 16
effective length of query: 598
effective length of database: 4,572,175
effective search space: 2734160650
effective search space used: 2734160650
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)