BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2850725.2.1
(847 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820644.1|CN820644 HRO4415_G07_N13ZS5 Lib AA069E1X Aven... 76 6e-014
gb|CN814955.1|CN814955 HRO4504_C09_F18ZS5 Lib AA071E1X Aven... 68 1e-011
gb|CN816101.1|CN816101 HRO4517_A05_A09ZS5 Lib AA071E1X Aven... 66 5e-011
gb|CN814789.1|CN814789 HRO4502_E05_I10ZS5 Lib AA071E1X Aven... 62 9e-010
gb|CN815034.1|CN815034 HRO4505_B06_C11ZS5 Lib AA071E1X Aven... 62 9e-010
gb|CN816873.1|CN816873 HRO4525_G05_M09ZS5 Lib AA071E1X Aven... 62 9e-010
gb|CN821053.1|CN821053 HRO4427_A04_B07ZS5 Lib AA069E1X Aven... 62 9e-010
gb|CN815850.1|CN815850 HRO4511_B09_D17ZS5 Lib AA071E1X Aven... 54 2e-007
gb|CN816425.1|CN816425 HRO4520_F02_L04ZS5 Lib AA071E1X Aven... 44 2e-004
gb|CN819130.1|CN819130 HRO4468_G03_M06ZS5 Lib AA070E1X Aven... 44 2e-004
>gb|CN820644.1|CN820644 HRO4415_G07_N13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_G07_N13, mRNA
sequence
Length = 614
Score = 75.8 bits (38), Expect = 6e-014
Identities = 71/82 (86%)
Strand = Plus / Minus
Query: 576 ttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacgcag 635
|||||||||||||| || || || || |||||| |||| | || |||||||||||||||
Sbjct: 105 ttccctccctcttctcgcgacggaatggccttcttgcactgagccaggatcttcacgcag 46
Query: 636 tcctcatcactccagtggtgca 657
||||| ||||||||||||||||
Sbjct: 45 tcctcgtcactccagtggtgca 24
>gb|CN814955.1|CN814955 HRO4504_C09_F18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_C09_F18, mRNA sequence
Length = 648
Score = 67.9 bits (34), Expect = 1e-011
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgcag 658
|||||||||||||||||||| |||||||||||||||||
Sbjct: 122 aggatcttcacgcagtcctcgtcactccagtggtgcag 85
>gb|CN816101.1|CN816101 HRO4517_A05_A09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_A05_A09, mRNA sequence
Length = 652
Score = 65.9 bits (33), Expect = 5e-011
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || |||||||| || ||||||||||| | ||| ||||| |||||
Sbjct: 244 accttccctccctcctcgcgtgaaggaatggccttcctgcactgggctaggattttcaca 185
Query: 633 cagtcctcatcactcca 649
|| |||||||| |||||
Sbjct: 184 caatcctcatcgctcca 168
>gb|CN814789.1|CN814789 HRO4502_E05_I10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_E05_I10, mRNA sequence
Length = 596
Score = 61.9 bits (31), Expect = 9e-010
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 623 gatcttcacgcagtcctcatcactccagtggtgcagcac 661
||||||||| || ||||||||||||||||||||||||||
Sbjct: 517 gatcttcacacaatcctcatcactccagtggtgcagcac 555
Score = 44.1 bits (22), Expect = 2e-004
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 383 gacacctcgagctccaaatttcttcagcagcttgtagtcactgaaacctgctttctggat 442
||||||||| ||||| |||||||| | | || ||||||||||| ||||||||| ||
Sbjct: 277 gacacctcgtgctcctaatttcttgacaattttatagtcactgaaccctgctttcatgaa 336
Query: 443 gaggtcacgccagtcatt 460
||| | ||||||||||||
Sbjct: 337 gagctgacgccagtcatt 354
>gb|CN815034.1|CN815034 HRO4505_B06_C11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_B06_C11, mRNA sequence
Length = 629
Score = 61.9 bits (31), Expect = 9e-010
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 623 gatcttcacgcagtcctcatcactccagtggtgcagcac 661
||||||||| ||||| |||||||||||||||||||||||
Sbjct: 228 gatcttcacacagtcgtcatcactccagtggtgcagcac 190
Score = 44.1 bits (22), Expect = 2e-004
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 383 gacacctcgagctccaaatttcttcagcagcttgtagtcactgaaacctgctttctggat 442
||||||||| ||||| |||||||| | | || ||||||||||| ||||||||| ||
Sbjct: 468 gacacctcgtgctcctaatttcttgacaactttatagtcactgaaccctgctttcatgaa 409
Query: 443 gaggtcacgccagtcatt 460
||| | ||||||||||||
Sbjct: 408 gagctgacgccagtcatt 391
>gb|CN816873.1|CN816873 HRO4525_G05_M09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_G05_M09, mRNA sequence
Length = 662
Score = 61.9 bits (31), Expect = 9e-010
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 623 gatcttcacgcagtcctcatcactccagtggtgcagcac 661
||||||||| ||||| |||||||||||||||||||||||
Sbjct: 175 gatcttcacacagtcgtcatcactccagtggtgcagcac 137
Score = 44.1 bits (22), Expect = 2e-004
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 383 gacacctcgagctccaaatttcttcagcagcttgtagtcactgaaacctgctttctggat 442
||||||||| ||||| |||||||| | | || ||||||||||| ||||||||| ||
Sbjct: 415 gacacctcgtgctcctaatttcttgacaactttatagtcactgaaccctgctttcatgaa 356
Query: 443 gaggtcacgccagtcatt 460
||| | ||||||||||||
Sbjct: 355 gagctgacgccagtcatt 338
>gb|CN821053.1|CN821053 HRO4427_A04_B07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_A04_B07, mRNA
sequence
Length = 644
Score = 61.9 bits (31), Expect = 9e-010
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 623 gatcttcacgcagtcctcatcactccagtggtgcagcac 661
||||||||| || ||||||||||||||||||||||||||
Sbjct: 143 gatcttcacacaatcctcatcactccagtggtgcagcac 105
Score = 44.1 bits (22), Expect = 2e-004
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 383 gacacctcgagctccaaatttcttcagcagcttgtagtcactgaaacctgctttctggat 442
||||||||| ||||| |||||||| | | || ||||||||||| ||||||||| ||
Sbjct: 383 gacacctcgtgctcctaatttcttgacaattttatagtcactgaaccctgctttcatgaa 324
Query: 443 gaggtcacgccagtcatt 460
||| | ||||||||||||
Sbjct: 323 gagctgacgccagtcatt 306
>gb|CN815850.1|CN815850 HRO4511_B09_D17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_B09_D17, mRNA sequence
Length = 621
Score = 54.0 bits (27), Expect = 2e-007
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 623 gatcttcacgcagtcctcatcactccagtggtgcagcac 661
||||||||| || ||||||||||||||| ||||||||||
Sbjct: 121 gatcttcacacaatcctcatcactccagcggtgcagcac 83
Score = 40.1 bits (20), Expect = 0.003
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 417 tagtcactgaaacctgctttctggatgaggtcacgccagtcatt 460
||||||||||| ||||||||| || ||| | ||||||||||||
Sbjct: 327 tagtcactgaaccctgctttcatgaagagctgacgccagtcatt 284
>gb|CN816425.1|CN816425 HRO4520_F02_L04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_F02_L04, mRNA sequence
Length = 538
Score = 44.1 bits (22), Expect = 2e-004
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 383 gacacctcgagctccaaatttcttcagcagcttgtagtcactgaaacctgctttctggat 442
||||||||| ||||| |||||||| | | || ||||||||||| ||||||||| ||
Sbjct: 279 gacacctcgtgctcctaatttcttgacaattttatagtcactgaaccctgctttcatgaa 220
Query: 443 gaggtcacgccagtcatt 460
||| | ||||||||||||
Sbjct: 219 gagctgacgccagtcatt 202
Score = 38.2 bits (19), Expect = 0.012
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 623 gatcttcacgcagtcctcatcactcca 649
||||||||| || ||||||||||||||
Sbjct: 39 gatcttcacacaatcctcatcactcca 13
>gb|CN819130.1|CN819130 HRO4468_G03_M06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_G03_M06, mRNA sequence
Length = 684
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 630 acgcagtcctcatcactccagt 651
||||||||||||||||||||||
Sbjct: 602 acgcagtcctcatcactccagt 581
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1965
Number of Sequences: 8143
Number of extensions: 1965
Number of successful extensions: 526
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 23
length of query: 847
length of database: 4,702,463
effective HSP length: 16
effective length of query: 831
effective length of database: 4,572,175
effective search space: 3799477425
effective search space used: 3799477425
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)