BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2835489.2.1
(885 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816985.1|CN816985 HRO4527_A03_B05ZS5 Lib AA071E1X Aven... 502 e-142
gb|CN820177.1|CN820177 HRO4412_A07_B14ZS5 Lib AA069E1X Aven... 478 e-135
gb|CN815372.1|CN815372 HRO4508_H11_P22ZS5 Lib AA071E1X Aven... 36 0.051
gb|CN820354.1|CN820354 HRO4418_D08_G16ZS5 Lib AA069E1X Aven... 36 0.051
gb|CN818544.1|CN818544 HRO4466_G06_N12ZS5 Lib AA070E1X Aven... 34 0.20
>gb|CN816985.1|CN816985 HRO4527_A03_B05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_A03_B05, mRNA sequence
Length = 608
Score = 502 bits (253), Expect = e-142
Identities = 466/537 (86%)
Strand = Plus / Minus
Query: 170 tataggcaattgatcaacagacttacaccatgtcacaggcaatgtgcccacaaaatcatg 229
|||||||||||||||| |||| || |||| || |||||||||||||| |||||||||||
Sbjct: 570 tataggcaattgatcagaagacctaaaccacgttacaggcaatgtgccaacaaaatcatg 511
Query: 230 atctccaaagaggcaatcggtaattcccatgccctcacttccaggcagccaggcagcgac 289
|| ||||||| |||||| |||||||| |||||||||||||||| ||||| ||||| ||
Sbjct: 510 gtccccaaagatgcaatcagtaattccggtgccctcacttccaggtagccacgcagcaac 451
Query: 290 tagagcttctatcttttccaaaacttgtgactcaataattaatggccttccagatataac 349
|||||| ||||||||||||| |||||| ||||||| || |||||||||||||| ||
Sbjct: 450 tagagcatctatcttttccattacttgttgatcaataaccaagggccttccagatatgac 391
Query: 350 aatcactagggtagggattttacttgcaacacggatgataaggtcagagccattaaacgg 409
||||||||| ||||||| |||||| ||||| || | || ||||| || |||||||| ||
Sbjct: 390 aatcactagtgtagggactttactagcaacccgagtaatcaggtcggaaccattaaaggg 331
Query: 410 aatactaaggtcagttctatctcctgtccattcggcatatggaacctctccaacaaccac 469
|||||||||||||||||||||||| |||||| ||||| |||||||| |||||||| ||
Sbjct: 330 aatactaaggtcagttctatctcccaaccattcagcataaggaacctcgccaacaacaac 271
Query: 470 caccgcataggaaaaccccccagtttcaatcatagcttcggttgggcatttctcatacac 529
|| ||||| ||||| || ||||||||||| ||||| || |||||||||| ||||| |||
Sbjct: 270 aactgcataagaaaatcctccagtttcaatgatagcatctgttgggcattgctcatgcac 211
Query: 530 aacttcagtttgcactcccactaattcttgtatggcctccaatatgctcgtaccaagagt 589
||||||||||| |||||| || |||||||||||||||||| |||||| |||||||||||
Sbjct: 210 aacttcagtttccactccgacggattcttgtatggcctccagtatgcttgtaccaagagt 151
Query: 590 tatttttccactgtctccatgccatgctatcgtccagccaccacattgatatccaatatc 649
||| |||||||||||||||||||| ||||| ||||| ||||| || ||||||||||||||
Sbjct: 150 tatctttccactgtctccatgccaagctattgtccacccaccgcactgatatccaatatc 91
Query: 650 atcagcatgtgttcctgcaaccagtattctttttgcatctttggccaatggaaggaa 706
||||||||||| |||||||| ||||||| |||||||| ||||||||||||||||||
Sbjct: 90 gtcagcatgtgtccctgcaacaagtattcgttttgcatttttggccaatggaaggaa 34
>gb|CN820177.1|CN820177 HRO4412_A07_B14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_A07_B14, mRNA
sequence
Length = 675
Score = 478 bits (241), Expect = e-135
Identities = 518/609 (85%), Gaps = 1/609 (0%)
Strand = Plus / Minus
Query: 99 ttatcgcttcgaaacatttttagcccatatccaacagggaatagcgggtcatagttagag 158
||||| |||| ||||||||| | |||||| |||| ||| |||| |||||||| || |
Sbjct: 629 ttatcacttctaaacattttcaacccatagccaaaaggaaataaggggtcatatttggca 570
Query: 159 tctccagcatctataggcaattgatcaacagacttacaccatgtcacaggcaatgtgccc 218
|||||| || |||||| ||||||||| | || || |||| || ||||||||||||||
Sbjct: 569 tctccaatatttataggaaattgatcagaaaacctaaaccacgttacaggcaatgtgcca 510
Query: 219 acaaaatcatgatctccaaagaggcaatcggtaattcccatgccctcacttccaggcagc 278
||||||||||| || ||||||| |||||| |||||||| |||||||||||||||| |||
Sbjct: 509 acaaaatcatggtccccaaagatgcaatcagtaattccgttgccctcacttccaggtagc 450
Query: 279 caggcagcgactagagcttctatcttttccaaaacttgtgactcaataattaatggcctt 338
|| ||||| |||||||| ||||||||||||| ||||||| ||||||| || ||||||
Sbjct: 449 cacgcagcaactagagcatctatcttttccagtacttgtggatcaataaccaagggcctt 390
Query: 339 ccagatataacaatcactagggtagggattttacttgcaacacggatgataaggtcagag 398
|||||||| ||||||||||| ||||||| |||||| ||||| || | || ||||| ||
Sbjct: 389 ccagatatgacaatcactagtgtagggactttactagcaacccgagtaatcaggtcggaa 330
Query: 399 ccattaaacggaatactaaggtcagttctatctcctgtccattcggcatatggaacctct 458
||||| || |||||||||||||||||||||||||| |||||| ||||| ||||||||
Sbjct: 329 ccattgaagggaatactaaggtcagttctatctcccaaccattcagcataaggaacctcg 270
Query: 459 ccaacaaccaccaccgcataggaaaaccccccagtttcaatcatagcttcggttgggcat 518
|||||||| || || ||||| ||||| || ||||||||||| ||||| || |||||||||
Sbjct: 269 ccaacaacaacaactgcataagaaaatcctccagtttcaatgatagcatctgttgggcat 210
Query: 519 ttctcatacacaacttcagtttgcactcccactaattcttgtatggcctccaatatgctc 578
| ||||| |||||||||||||| |||||| || |||||||||||||||| | ||||||
Sbjct: 209 tgctcatgcacaacttcagtttccactccgacggattcttgtatggcctctagtatgctt 150
Query: 579 gtaccaag-agttatttttccactgtctccatgccatgctatcgtccagccaccacattg 637
|||||||| |||||| |||||||||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 149 gtaccaagcagttatctttccactgtctccatgccaagctattgtccacccaccgcactg 90
Query: 638 atatccaatatcatcagcatgtgttcctgcaaccagtattctttttgcatctttggccaa 697
|||||||||||| ||||||||||| |||||||| ||||||| |||||||| |||||||||
Sbjct: 89 atatccaatatcgtcagcatgtgtccctgcaacgagtattcgttttgcatttttggccaa 30
Query: 698 tggaaggaa 706
|||||||||
Sbjct: 29 tggaaggaa 21
>gb|CN815372.1|CN815372 HRO4508_H11_P22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_H11_P22, mRNA sequence
Length = 720
Score = 36.2 bits (18), Expect = 0.051
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 816 tctgaaaatggatgctca 833
||||||||||||||||||
Sbjct: 463 tctgaaaatggatgctca 480
>gb|CN820354.1|CN820354 HRO4418_D08_G16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_D08_G16, mRNA
sequence
Length = 546
Score = 36.2 bits (18), Expect = 0.051
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 816 tctgaaaatggatgctca 833
||||||||||||||||||
Sbjct: 256 tctgaaaatggatgctca 273
>gb|CN818544.1|CN818544 HRO4466_G06_N12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_G06_N12, mRNA sequence
Length = 720
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 650 atcagcatgtgttcctg 666
|||||||||||||||||
Sbjct: 583 atcagcatgtgttcctg 599
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2134
Number of Sequences: 8143
Number of extensions: 2134
Number of successful extensions: 534
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 8
length of query: 885
length of database: 4,702,463
effective HSP length: 16
effective length of query: 869
effective length of database: 4,572,175
effective search space: 3973220075
effective search space used: 3973220075
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)