BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763196.2.1
(2766 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821418.1|CN821418 HRO4425_B03_C05ZS5 Lib AA069E1X Aven... 129 1e-029
gb|CN818268.1|CN818268 HRO4457_A02_B03ZS5 Lib AA070E1X Aven... 40 0.010
>gb|CN821418.1|CN821418 HRO4425_B03_C05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_B03_C05, mRNA
sequence
Length = 401
Score = 129 bits (65), Expect = 1e-029
Identities = 185/225 (82%)
Strand = Plus / Minus
Query: 221 atcttccatgcaactgtgtcattgtcacagtgccaatggagtggctccggtccttctcgc 280
|||||||||||||||| ||||| | ||||| || |||||||||||| || |||||||
Sbjct: 239 atcttccatgcaactgcgtcatcgatacagtacctatggagtggctcttctcgttctcgc 180
Query: 281 ttgacttgctggattcgatctcacggcctcgaagcatcagcgtaggcggcctcggattag 340
|||| ||||| || ||||| |||||||||||||||||| || || |||||||| | |
Sbjct: 179 ttgatttgctcgactcgatagaacggcctcgaagcatcagggttggtggcctcggcatcg 120
Query: 341 gaaggctcgagctgtcgttgctcagcataaggatgacagtggggatgtcaggtcgctcat 400
||||| | |||||||||||||||| ||| | |||||| | ||||||||||| || || |
Sbjct: 119 gaagggtggagctgtcgttgctcaacatgacgatgaccatagggatgtcaggacgatctt 60
Query: 401 ctgcgtgatcttgcacgcacagcaacgcaatatggatgcatctca 445
|| |||||||||||||| ||||| ||||| |||||||| ||||
Sbjct: 59 gcgcatgatcttgcacgcatagcaatgcaatgtggatgcacctca 15
>gb|CN818268.1|CN818268 HRO4457_A02_B03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_A02_B03, mRNA sequence
Length = 548
Score = 40.1 bits (20), Expect = 0.010
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1898 cccaatcttgtgaagatttt 1917
||||||||||||||||||||
Sbjct: 276 cccaatcttgtgaagatttt 257
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6718
Number of Sequences: 8143
Number of extensions: 6718
Number of successful extensions: 1887
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1885
Number of HSP's gapped (non-prelim): 2
length of query: 2766
length of database: 4,702,463
effective HSP length: 17
effective length of query: 2749
effective length of database: 4,564,032
effective search space: 12546523968
effective search space used: 12546523968
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)