BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2750763.3.1
         (819 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN817858.1|CN817858  HRO4462_E11_J22ZS5 Lib AA070E1X Aven...    34   0.19 
emb|AJ251050.1|AFA251050  Avena fatua mRNA for VIP1 protein ...    34   0.19 

>gb|CN817858.1|CN817858 HRO4462_E11_J22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4462_E11_J22, mRNA sequence
          Length = 862

 Score = 34.2 bits (17), Expect = 0.19
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 628 ctcaaggaggagctcat 644
           |||||||||||||||||
Sbjct: 65  ctcaaggaggagctcat 81



>emb|AJ251050.1|AFA251050 Avena fatua mRNA for VIP1 protein (vip1 gene)
          Length = 1061

 Score = 34.2 bits (17), Expect = 0.19
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 486 cggcggccgtgacggca 502
           |||||||||||||||||
Sbjct: 655 cggcggccgtgacggca 639



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1704
Number of Sequences: 8143
Number of extensions: 1704
Number of successful extensions: 509
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 3
length of query: 819
length of database: 4,702,463
effective HSP length: 16
effective length of query: 803
effective length of database: 4,572,175
effective search space: 3671456525
effective search space used: 3671456525
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)