BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2647917.2.1
         (3189 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN821413.1|CN821413  HRO4425_A08_A15ZS5 Lib AA069E1X Aven...    36   0.19 

>gb|CN821413.1|CN821413 HRO4425_A08_A15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
            leaf Avena sativa cDNA clone HRO4425_A08_A15, mRNA
            sequence
          Length = 688

 Score = 36.2 bits (18), Expect = 0.19
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 988  gtactcagggtcaaggtagcca 1009
            |||||||||||| |||||||||
Sbjct: 585  gtactcagggtccaggtagcca 606



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7700
Number of Sequences: 8143
Number of extensions: 7700
Number of successful extensions: 1916
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1915
Number of HSP's gapped (non-prelim): 1
length of query: 3189
length of database: 4,702,463
effective HSP length: 17
effective length of query: 3172
effective length of database: 4,564,032
effective search space: 14477109504
effective search space used: 14477109504
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)