BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647391.2.1
(1118 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE439371.1|BE439371 CDO1510_WHE05H09R ITEC CDO Oat cDNA ... 44 3e-004
gb|L24391.1|ASTDBP Arena sativa DNA binding protein (PF-1) ... 36 0.065
>gb|BE439371.1|BE439371 CDO1510_WHE05H09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1510_WHE05H09, mRNA sequence
Length = 237
Score = 44.1 bits (22), Expect = 3e-004
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 210 acaagagcgcgctcctcctggggtccaacccggtgcacaagagcgtgccggtgctcctcc 269
||||| ||| ||||||||| || ||||||||||||||||| ||||| |||||| |||
Sbjct: 135 acaagggcgagctcctcctcaagtacaacccggtgcacaagaaggtgcccgtgctcatcc 194
Query: 270 ac 271
||
Sbjct: 195 ac 196
>gb|L24391.1|ASTDBP Arena sativa DNA binding protein (PF-1) mRNA, complete cds
Length = 960
Score = 36.2 bits (18), Expect = 0.065
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 466 ggcggcggcggtggcgcg 483
||||||||||||||||||
Sbjct: 399 ggcggcggcggtggcgcg 382
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2288
Number of Sequences: 8143
Number of extensions: 2288
Number of successful extensions: 640
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 3
length of query: 1118
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1102
effective length of database: 4,572,175
effective search space: 5038536850
effective search space used: 5038536850
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)