BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643556.2.1
(1354 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY597512.1| Avena sativa leafy hull sterile 1 (LHS1) mRN... 131 2e-030
gb|CN814821.1|CN814821 HRO4502_H02_O04ZS5 Lib AA071E1X Aven... 36 0.079
gb|CN814869.1|CN814869 HRO4503_D04_H07ZS5 Lib AA071E1X Aven... 34 0.31
gb|CN815175.1|CN815175 HRO4506_F12_K24ZS5 Lib AA071E1X Aven... 34 0.31
gb|CN818484.1|CN818484 HRO4460_B12_C24ZS5 Lib AA070E1X Aven... 34 0.31
gb|CN821359.1|CN821359 HRO4424_D08_H16ZS5 Lib AA069E1X Aven... 34 0.31
>gb|AY597512.1| Avena sativa leafy hull sterile 1 (LHS1) mRNA, partial cds
Length = 904
Score = 131 bits (66), Expect = 2e-030
Identities = 102/114 (89%)
Strand = Plus / Plus
Query: 295 ggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccg 354
||||||| |||||| ||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 20 ggcaggtgaccttcgccaagcgccggaacgggctgctcaagaaggcgtacgagctctcgc 79
Query: 355 tgctctgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctct 408
|||||||||||||||||| ||| |||||| |||||||| |||||||||||||||
Sbjct: 80 tgctctgcgacgccgaggacgccctcatcatcttctccggccgcggccgcctct 133
>gb|CN814821.1|CN814821 HRO4502_H02_O04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_H02_O04, mRNA sequence
Length = 680
Score = 36.2 bits (18), Expect = 0.079
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 557 cttgcagaactccaacag 574
||||||||||||||||||
Sbjct: 628 cttgcagaactccaacag 645
>gb|CN814869.1|CN814869 HRO4503_D04_H07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_D04_H07, mRNA sequence
Length = 346
Score = 34.2 bits (17), Expect = 0.31
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1070 tgcatgtgcgcacacgc 1086
|||||||||||||||||
Sbjct: 177 tgcatgtgcgcacacgc 161
>gb|CN815175.1|CN815175 HRO4506_F12_K24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_F12_K24, mRNA sequence
Length = 708
Score = 34.2 bits (17), Expect = 0.31
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 511 agcattacaagcaggaatctg 531
|||||||| ||||||||||||
Sbjct: 84 agcattaccagcaggaatctg 104
>gb|CN818484.1|CN818484 HRO4460_B12_C24ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_B12_C24, mRNA sequence
Length = 844
Score = 34.2 bits (17), Expect = 0.31
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 119 atccacagtaacaggca 135
|||||||||||||||||
Sbjct: 447 atccacagtaacaggca 463
>gb|CN821359.1|CN821359 HRO4424_D08_H16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_D08_H16, mRNA
sequence
Length = 648
Score = 34.2 bits (17), Expect = 0.31
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 455 gaaggcaaccagtgaca 471
|||||||||||||||||
Sbjct: 285 gaaggcaaccagtgaca 301
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3474
Number of Sequences: 8143
Number of extensions: 3474
Number of successful extensions: 989
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 6
length of query: 1354
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1338
effective length of database: 4,572,175
effective search space: 6117570150
effective search space used: 6117570150
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)