BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2623104.2.3
         (1540 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN814939.1|CN814939  HRO4504_B05_D10ZS5 Lib AA071E1X Aven...    34   0.35 
gb|CN816574.1|CN816574  HRO4522_C11_E22ZS5 Lib AA071E1X Aven...    34   0.35 
gb|CN817838.1|CN817838  HRO4462_G05_N10ZS5 Lib AA070E1X Aven...    34   0.35 
gb|CN818168.1|CN818168  HRO4456_G05_M10ZS5 Lib AA070E1X Aven...    34   0.35 
gb|CN820110.1|CN820110  HRO4411_C01_F01ZS5 Lib AA069E1X Aven...    34   0.35 

>gb|CN814939.1|CN814939 HRO4504_B05_D10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4504_B05_D10, mRNA sequence
          Length = 607

 Score = 34.2 bits (17), Expect = 0.35
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 799 cggcatcagcatcggca 815
           |||||||||||||||||
Sbjct: 124 cggcatcagcatcggca 108



>gb|CN816574.1|CN816574 HRO4522_C11_E22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
            sativa cDNA clone HRO4522_C11_E22, mRNA sequence
          Length = 655

 Score = 34.2 bits (17), Expect = 0.35
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1050 tcaccgtcaaggacgtc 1066
            |||||||||||||||||
Sbjct: 56   tcaccgtcaaggacgtc 72



>gb|CN817838.1|CN817838 HRO4462_G05_N10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4462_G05_N10, mRNA sequence
          Length = 758

 Score = 34.2 bits (17), Expect = 0.35
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 962 atcaagatggaggactc 978
           |||||||||||||||||
Sbjct: 250 atcaagatggaggactc 266



>gb|CN818168.1|CN818168 HRO4456_G05_M10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4456_G05_M10, mRNA sequence
          Length = 484

 Score = 34.2 bits (17), Expect = 0.35
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 498 actgcaagatccttccc 514
           |||||||||||||||||
Sbjct: 203 actgcaagatccttccc 187



>gb|CN820110.1|CN820110 HRO4411_C01_F01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4411_C01_F01, mRNA
           sequence
          Length = 558

 Score = 34.2 bits (17), Expect = 0.35
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 498 actgcaagatccttccc 514
           |||||||||||||||||
Sbjct: 264 actgcaagatccttccc 248



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4078
Number of Sequences: 8143
Number of extensions: 4078
Number of successful extensions: 1287
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1281
Number of HSP's gapped (non-prelim): 6
length of query: 1540
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1523
effective length of database: 4,564,032
effective search space: 6951020736
effective search space used: 6951020736
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)