BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621963.2.1
(743 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821322.1|CN821322 HRO4424_A05_B10ZS5 Lib AA069E1X Aven... 46 4e-005
gb|CN819554.1|CN819554 HRO4401_E06_I11ZS5 Lib AA069E1X Aven... 44 2e-004
gb|CN816756.1|CN816756 HRO4524_D08_H16ZS5 Lib AA071E1X Aven... 40 0.003
gb|CN820983.1|CN820983 HRO4422_B10_C20ZS5 Lib AA069E1X Aven... 34 0.17
>gb|CN821322.1|CN821322 HRO4424_A05_B10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_A05_B10, mRNA
sequence
Length = 457
Score = 46.1 bits (23), Expect = 4e-005
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 204 caagtgctgcccgctggtgcagggggtggcggacctggacgcggcgctgtgcctctgcac 263
|||||||||| |||| |||||||| || || | ||| ||||||| |||||||||||||
Sbjct: 26 caagtgctgctcgctcgtgcagggcgtcgccggcctcaccgcggcggtgtgcctctgcac 85
Query: 264 caccatc 270
| |||||
Sbjct: 86 cgccatc 92
>gb|CN819554.1|CN819554 HRO4401_E06_I11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_E06_I11, mRNA
sequence
Length = 465
Score = 44.1 bits (22), Expect = 2e-004
Identities = 74/90 (82%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 251 tgtgcctctg-caccaccatccgcgcgcgcctgctcaacatcaacatctacctccccatc 309
|||||||||| ||||||||||||| | ||||||||||||||| || |||||| ||
Sbjct: 7 tgtgcctctgtcaccaccatccgcctcaggctgctcaacatcaacctcgtcctcccgctc 66
Query: 310 gcgctcaacctgctcatcacctgcggcaag 339
|| ||| | || ||| ||||||||||||||
Sbjct: 67 gccctccagctcctcctcacctgcggcaag 96
>gb|CN816756.1|CN816756 HRO4524_D08_H16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_D08_H16, mRNA sequence
Length = 419
Score = 40.1 bits (20), Expect = 0.003
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 243 cgcggcgctgtgcctctgcaccaccatc 270
||||||| |||||||||||||| |||||
Sbjct: 27 cgcggcggtgtgcctctgcaccgccatc 54
>gb|CN820983.1|CN820983 HRO4422_B10_C20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_B10_C20, mRNA
sequence
Length = 726
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 96 gacgccgccggcggtgc 112
|||||||||||||||||
Sbjct: 414 gacgccgccggcggtgc 398
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2153
Number of Sequences: 8143
Number of extensions: 2153
Number of successful extensions: 617
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 4
length of query: 743
length of database: 4,702,463
effective HSP length: 16
effective length of query: 727
effective length of database: 4,572,175
effective search space: 3323971225
effective search space used: 3323971225
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)