BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621801.2.1
(679 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814663.1|CN814663 HRO4501_B08_C15ZS5 Lib AA071E1X Aven... 36 0.039
gb|CN815999.1|CN815999 HRO4515_G07_N13ZS5 Lib AA071E1X Aven... 36 0.039
gb|CN818034.1|CN818034 HRO4472_E02_I04ZS5 Lib AA070E1X Aven... 36 0.039
gb|CN819161.1|CN819161 HRO4457_D12_H23ZS5 Lib AA070E1X Aven... 36 0.039
gb|CN815312.1|CN815312 HRO4508_C09_F18ZS5 Lib AA071E1X Aven... 34 0.15
gb|CN816562.1|CN816562 HRO4522_B08_C16ZS5 Lib AA071E1X Aven... 34 0.15
gb|CN819468.1|CN819468 HRO4406_C09_E18ZS5 Lib AA069E1X Aven... 34 0.15
>gb|CN814663.1|CN814663 HRO4501_B08_C15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_B08_C15, mRNA sequence
Length = 463
Score = 36.2 bits (18), Expect = 0.039
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 360 ctcctccacgccgctgaa 377
||||||||||||||||||
Sbjct: 139 ctcctccacgccgctgaa 122
>gb|CN815999.1|CN815999 HRO4515_G07_N13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_G07_N13, mRNA sequence
Length = 448
Score = 36.2 bits (18), Expect = 0.039
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 360 ctcctccacgccgctgaa 377
||||||||||||||||||
Sbjct: 145 ctcctccacgccgctgaa 128
>gb|CN818034.1|CN818034 HRO4472_E02_I04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_E02_I04, mRNA sequence
Length = 611
Score = 36.2 bits (18), Expect = 0.039
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 360 ctcctccacgccgctgaa 377
||||||||||||||||||
Sbjct: 421 ctcctccacgccgctgaa 404
>gb|CN819161.1|CN819161 HRO4457_D12_H23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_D12_H23, mRNA sequence
Length = 354
Score = 36.2 bits (18), Expect = 0.039
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 360 ctcctccacgccgctgaa 377
||||||||||||||||||
Sbjct: 32 ctcctccacgccgctgaa 15
>gb|CN815312.1|CN815312 HRO4508_C09_F18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_C09_F18, mRNA sequence
Length = 638
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 106 catgcggggttcttgat 122
|||||||||||||||||
Sbjct: 599 catgcggggttcttgat 583
>gb|CN816562.1|CN816562 HRO4522_B08_C16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_B08_C16, mRNA sequence
Length = 819
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 106 catgcggggttcttgat 122
|||||||||||||||||
Sbjct: 499 catgcggggttcttgat 483
>gb|CN819468.1|CN819468 HRO4406_C09_E18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_C09_E18, mRNA
sequence
Length = 669
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 106 catgcggggttcttgat 122
|||||||||||||||||
Sbjct: 64 catgcggggttcttgat 48
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1454
Number of Sequences: 8143
Number of extensions: 1454
Number of successful extensions: 366
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 9
length of query: 679
length of database: 4,702,463
effective HSP length: 16
effective length of query: 663
effective length of database: 4,572,175
effective search space: 3031352025
effective search space used: 3031352025
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)