BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619548.2.1
(691 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815714.1|CN815714 HRO4514_G01_M02ZS5 Lib AA071E1X Aven... 329 2e-090
gb|CN815860.1|CN815860 HRO4511_C09_F17ZS5 Lib AA071E1X Aven... 321 5e-088
gb|CN816546.1|CN816546 HRO4522_A04_A08ZS5 Lib AA071E1X Aven... 307 7e-084
gb|CN821620.1|CN821620 HRO4408_D02_H04Z Lib AA069E1X Avena ... 270 2e-072
gb|CN820862.1|CN820862 HRO4420_G10_N20ZS5 Lib AA069E1X Aven... 200 1e-051
gb|CN821061.1|CN821061 HRO4427_B01_D01ZS5 Lib AA069E1X Aven... 38 0.010
>gb|CN815714.1|CN815714 HRO4514_G01_M02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_G01_M02, mRNA sequence
Length = 643
Score = 329 bits (166), Expect = 2e-090
Identities = 349/410 (85%)
Strand = Plus / Plus
Query: 60 agatggcggtgccgctgctgacgcagaagatcgtgaagaagagggtcaagcagttcaaga 119
||||||||||||| ||||||||| |||||||||||||||| | |||||| |||||||
Sbjct: 34 agatggcggtgcctctgctgacggcgaagatcgtgaagaagcgtaccaagcacttcaaga 93
Query: 120 ggccccatcttgaccgctacaagtgccttaagccaagctggcgcaggcccaagggtatcg 179
|| ||||| || ||||||| |||| ||||| ||||||||| |||| |||||||| |
Sbjct: 94 gggcccatagcgatcgctacatcggcctcaagcccagctggcgccggccaaagggtattg 153
Query: 180 actcccgcgtcaggcgtaagttcaagggatgcaccttgatgcccaacatcggatatggct 239
||||||| || ||| | |||||||||||||| ||||||||||||||||| || || || |
Sbjct: 154 actcccgtgtaaggagaaagttcaagggatgtaccttgatgcccaacattggttacggtt 213
Query: 240 ccgacaagaagaccaggcactaccttcccaacaagttcaaaaagtttgttgttcacaatg 299
| ||||||||||||||||| ||||| |||||||||||||| |||||||| || ||||| |
Sbjct: 214 ctgacaagaagaccaggcattacctgcccaacaagttcaagaagtttgtcgtccacaacg 273
Query: 300 tctccgagctggagctgctgctgatgcacaacaggacttactgcgctgagatcgcccaca 359
|||| ||||||||| |||| |||||||||||||||| || || ||||||||||| ||||
Sbjct: 274 tctctgagctggagttgcttatgatgcacaacaggacatattgtgctgagatcgcgcaca 333
Query: 360 acgtgtccacccgcaagcgcaaggagattgtggagcgtgctgcgcaactggacatcgtgg 419
| || || ||| ||||| |||| |||||||||||||||||||| ||||| ||||| |
Sbjct: 334 atgtctcttcccagaagcgtaaggtcattgtggagcgtgctgcgcagctggatatcgttg 393
Query: 420 tcaccaacaagctcgccaggctccgcagccaagaggacgagtgaaatgtt 469
|||| |||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct: 394 tcacaaacaagcttgccaggctccgcagccaggaggatgagtgaaatgtt 443
>gb|CN815860.1|CN815860 HRO4511_C09_F17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_C09_F17, mRNA sequence
Length = 587
Score = 321 bits (162), Expect = 5e-088
Identities = 318/370 (85%)
Strand = Plus / Plus
Query: 92 gtgaagaagagggtcaagcagttcaagaggccccatcttgaccgctacaagtgccttaag 151
||||||||||||||||| || ||||||||| ||||| |||||||||| |||| |||
Sbjct: 11 gtgaagaagagggtcaaacaattcaagagggcccatagcgaccgctacattggcctcaag 70
Query: 152 ccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcgtaagttcaagggatgc 211
| |||||||||||||| |||||||| || ||||| |||||||| |||||||||||| |
Sbjct: 71 actagctggcgcaggccgaagggtattgattcccgtgtcaggcgaaagttcaagggagtc 130
Query: 212 accttgatgcccaacatcggatatggctccgacaagaagaccaggcactaccttcccaac 271
|| |||||||||||||| || || || || ||||||||||||||||| |||||||| |||
Sbjct: 131 acgttgatgcccaacattggctacgggtcagacaagaagaccaggcattaccttcctaac 190
Query: 272 aagttcaaaaagtttgttgttcacaatgtctccgagctggagctgctgctgatgcacaac 331
|||||||| ||||| ||||| ||||| | || |||||||||||||| |||||||||||
Sbjct: 191 aagttcaagaagttcgttgtccacaacatttctgagctggagctgctcatgatgcacaac 250
Query: 332 aggacttactgcgctgagatcgcccacaacgtgtccacccgcaagcgcaaggagattgtg 391
||||| ||||| || ||||||||||||||||| ||||| ||||||||||| || ||
Sbjct: 251 aggacctactgtgcggagatcgcccacaacgtctccacgaagaagcgcaaggacatcgtt 310
Query: 392 gagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctccgcagccaa 451
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 311 gagcgtgctgcgcagcttgacatcgtggtcaccaacaagcttgccaggctccgcagccag 370
Query: 452 gaggacgagt 461
||||| ||||
Sbjct: 371 gaggatgagt 380
>gb|CN816546.1|CN816546 HRO4522_A04_A08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_A04_A08, mRNA sequence
Length = 639
Score = 307 bits (155), Expect = 7e-084
Identities = 230/255 (90%)
Strand = Plus / Plus
Query: 211 caccttgatgcccaacatcggatatggctccgacaagaagaccaggcactaccttcccaa 270
|||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||
Sbjct: 6 caccttgatgcccaacatcggatacggttctgacaagaagaccaggcactacctgcccaa 65
Query: 271 caagttcaaaaagtttgttgttcacaatgtctccgagctggagctgctgctgatgcacaa 330
||||||||| |||||||| || ||||||||||| |||||||||||||| ||||||||||
Sbjct: 66 caagttcaagaagtttgtggtgcacaatgtctctgagctggagctgcttatgatgcacaa 125
Query: 331 caggacttactgcgctgagatcgcccacaacgtgtccacccgcaagcgcaaggagattgt 390
|||||| ||||| || |||||||| |||||||||||||| | ||||||||| ||| ||
Sbjct: 126 caggacgtactgtgccgagatcgcacacaacgtgtccacgcagaagcgcaagacgatagt 185
Query: 391 ggagcgtgctgcgcaactggacatcgtggtcaccaacaagctcgccaggctccgcagcca 450
||||||||| || || || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggagcgtgccgcccagctcgacatcgtggtcaccaacaagctcgccaggctccgcagcca 245
Query: 451 agaggacgagtgaaa 465
||||||||||||||
Sbjct: 246 ggaggacgagtgaaa 260
>gb|CN821620.1|CN821620 HRO4408_D02_H04Z Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D02_H04, mRNA
sequence
Length = 477
Score = 270 bits (136), Expect = 2e-072
Identities = 244/280 (87%)
Strand = Plus / Plus
Query: 182 tcccgcgtcaggcgtaagttcaagggatgcaccttgatgcccaacatcggatatggctcc 241
||||| |||||||| |||||||||||| ||| |||||||||||||| || || || ||
Sbjct: 14 tcccgtgtcaggcgaaagttcaagggagtcacattgatgcccaacattggctacgggtca 73
Query: 242 gacaagaagaccaggcactaccttcccaacaagttcaaaaagtttgttgttcacaatgtc 301
||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||| ||
Sbjct: 74 gacaagaagaccaggcattaccttcctaacaagttcaagaagtttgttgtccacaacatc 133
Query: 302 tccgagctggagctgctgctgatgcacaacaggacttactgcgctgagatcgcccacaac 361
|| |||||||||||||| |||||||||||||||| ||||| || ||||| |||||||||
Sbjct: 134 tctgagctggagctgctcatgatgcacaacaggacctactgtgcggagattgcccacaac 193
Query: 362 gtgtccacccgcaagcgcaaggagattgtggagcgtgctgcgcaactggacatcgtggtc 421
|| ||||| ||||||||||| || || |||||||||||||| || ||||||||||||
Sbjct: 194 gtctccacgaagaagcgcaaggacatcgttgagcgtgctgcgcagcttgacatcgtggtc 253
Query: 422 accaacaagctcgccaggctccgcagccaagaggacgagt 461
||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 254 accaacaagcttgccaggctccgcagccaggaggatgagt 293
>gb|CN820862.1|CN820862 HRO4420_G10_N20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_G10_N20, mRNA
sequence
Length = 427
Score = 200 bits (101), Expect = 1e-051
Identities = 155/173 (89%)
Strand = Plus / Plus
Query: 293 cacaatgtctccgagctggagctgctgctgatgcacaacaggacttactgcgctgagatc 352
||||||||||| |||||||||||||| |||||||||||||||| ||||| |||||||||
Sbjct: 21 cacaatgtctctgagctggagctgcttatgatgcacaacaggacgtactgtgctgagatc 80
Query: 353 gcccacaacgtgtccacccgcaagcgcaaggagattgtggagcgtgctgcgcaactggac 412
|| || ||||||||||| | ||||||||| ||| ||||||||||| || || || |||
Sbjct: 81 gcacataacgtgtccactcagaagcgcaagacgatagtggagcgtgccgcccagctcgac 140
Query: 413 atcgtggtcaccaacaagctcgccaggctccgcagccaagaggacgagtgaaa 465
|||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 141 atcgtggtcaccaacaagctcgccaggctccgcagccaggaggacgagtgaaa 193
>gb|CN821061.1|CN821061 HRO4427_B01_D01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_B01_D01, mRNA
sequence
Length = 408
Score = 38.2 bits (19), Expect = 0.010
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 82 gcagaagatcgtgaagaag 100
|||||||||||||||||||
Sbjct: 42 gcagaagatcgtgaagaag 60
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1593
Number of Sequences: 8143
Number of extensions: 1593
Number of successful extensions: 432
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 6
length of query: 691
length of database: 4,702,463
effective HSP length: 16
effective length of query: 675
effective length of database: 4,572,175
effective search space: 3086218125
effective search space used: 3086218125
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)