BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619325.2.1
(1403 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821615.1|CN821615 HRO4408_C09_F18ZS5 Lib AA069E1X Aven... 64 4e-010
gb|CN815456.1|CN815456 HRO4509_H04_O07ZS5 Lib AA071E1X Aven... 58 2e-008
gb|CN815631.1|CN815631 HRO4513_G09_M17ZS5 Lib AA071E1X Aven... 34 0.32
gb|CN815961.1|CN815961 HRO4515_D04_H07ZS5 Lib AA071E1X Aven... 34 0.32
>gb|CN821615.1|CN821615 HRO4408_C09_F18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_C09_F18, mRNA
sequence
Length = 690
Score = 63.9 bits (32), Expect = 4e-010
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 665 ctctccggcgcgcacaccgtcggccgctccca 696
||||||||||||||||||||||||||||||||
Sbjct: 82 ctctccggcgcgcacaccgtcggccgctccca 113
Score = 34.2 bits (17), Expect = 0.32
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 985 ggccatggtcaagatgg 1001
|||||||||||||||||
Sbjct: 393 ggccatggtcaagatgg 409
>gb|CN815456.1|CN815456 HRO4509_H04_O07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_H04_O07, mRNA sequence
Length = 555
Score = 58.0 bits (29), Expect = 2e-008
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 843 tggacaaccagtactacaagaacgtgctc 871
|||||||||||||||||||||||||||||
Sbjct: 129 tggacaaccagtactacaagaacgtgctc 157
>gb|CN815631.1|CN815631 HRO4513_G09_M17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_G09_M17, mRNA sequence
Length = 389
Score = 34.2 bits (17), Expect = 0.32
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1038 tcaggaagaactgcagg 1054
|||||||||||||||||
Sbjct: 171 tcaggaagaactgcagg 187
>gb|CN815961.1|CN815961 HRO4515_D04_H07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_D04_H07, mRNA sequence
Length = 721
Score = 34.2 bits (17), Expect = 0.32
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1038 tcaggaagaactgcagg 1054
|||||||||||||||||
Sbjct: 519 tcaggaagaactgcagg 535
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3908
Number of Sequences: 8143
Number of extensions: 3908
Number of successful extensions: 890
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 8
length of query: 1403
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1386
effective length of database: 4,564,032
effective search space: 6325748352
effective search space used: 6325748352
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)