BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2568371.2.1
         (782 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN817712.1|CN817712  HRO4461_F05_L09ZS5 Lib AA070E1X Aven...    34   0.18 
gb|CN821040.1|CN821040  HRO4422_H03_O06ZS5 Lib AA069E1X Aven...    34   0.18 
emb|Z15131.1|ASBGLUCAN  A.sativa mRNA for beta glucanase           34   0.18 

>gb|CN817712.1|CN817712 HRO4461_F05_L09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4461_F05_L09, mRNA sequence
          Length = 586

 Score = 34.2 bits (17), Expect = 0.18
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 165 tcaccttcgtcatcacc 181
           |||||||||||||||||
Sbjct: 43  tcaccttcgtcatcacc 59



>gb|CN821040.1|CN821040 HRO4422_H03_O06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4422_H03_O06, mRNA
           sequence
          Length = 580

 Score = 34.2 bits (17), Expect = 0.18
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 165 tcaccttcgtcatcacc 181
           |||||||||||||||||
Sbjct: 100 tcaccttcgtcatcacc 116



>emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase
          Length = 1448

 Score = 34.2 bits (17), Expect = 0.18
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 224 ggcaagcacggcggcgc 240
           |||||||||||||||||
Sbjct: 766 ggcaagcacggcggcgc 782



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1935
Number of Sequences: 8143
Number of extensions: 1935
Number of successful extensions: 649
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 3
length of query: 782
length of database: 4,702,463
effective HSP length: 16
effective length of query: 766
effective length of database: 4,572,175
effective search space: 3502286050
effective search space used: 3502286050
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)