BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2542159.2.1
(1231 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF084005.1|AF084005 Avena fatua ras-like small monomeric... 462 e-130
gb|CN815005.1|CN815005 HRO4504_G12_N24ZS5 Lib AA071E1X Aven... 192 5e-049
gb|BE439315.1|BE439315 CDO1419_WHE05F05F ITEC CDO Oat cDNA ... 44 3e-004
gb|BE439348.1|BE439348 CDO1419_WHE05F05R ITEC CDO Oat cDNA ... 44 3e-004
gb|CN816026.1|CN816026 HRO4516_A12_B24ZS5 Lib AA071E1X Aven... 34 0.28
gb|CN818057.1|CN818057 HRO4472_B09_C18ZS5 Lib AA070E1X Aven... 34 0.28
gb|CN819786.1|CN819786 HRO4404_A10_B20ZS5 Lib AA069E1X Aven... 34 0.28
>gb|AF084005.1|AF084005 Avena fatua ras-like small monomeric GTP-binding protein (SAR1)
mRNA, complete cds
Length = 801
Score = 462 bits (233), Expect = e-130
Identities = 494/581 (85%)
Strand = Plus / Plus
Query: 146 aagatgttcctggtggactggttctatggggtgctggcatcgcttgggctgtggcagaag 205
||||||||||| |||||||||||| ||||||||||| ||||| || ||||||||||||
Sbjct: 161 aagatgttcctatgggactggttctacggggtgctggcctcgctcggcctgtggcagaag 220
Query: 206 gaggctaagatcctcttccttggcctcgacaacgccggcaagaccaccctcctccacatg 265
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 221 gaggctaagatcctcttccttggcctcgacaacgccggcaagaccacgctcctccacatg 280
Query: 266 ctgaaggacgagcggctcgtacagcaccagccgacgcagtaccccacgtcagaagagttg 325
|| ||||||||||||||||| ||||||||||| |||||| |||| ||||| || ||| |
Sbjct: 281 ctcaaggacgagcggctcgtgcagcaccagcccacgcagcacccaacgtcggaggagctc 340
Query: 326 agcatcggcaggatcaagttcaaggcgttcgaccttgggggccaccagatcgcccgccgc 385
|||||||||| |||||||||||| || |||||||| || |||||||||||||| |||||
Sbjct: 341 agcatcggcaagatcaagttcaaagccttcgacctcggaggccaccagatcgctcgccga 400
Query: 386 gtctggaaggactactacgccaaggttgatgctgttgtgtacttggtggatgctgttgac 445
|||||||| || |||||||| |||||||||||||| || |||||||| ||||| |||
Sbjct: 401 gtctggaaagattactacgctaaggttgatgctgtagtatacttggtagatgcatacgac 460
Query: 446 aaggaacgttttgccgagtcgaagaaggagctcgatgcgcttcttgcagatgactccctt 505
||||| || ||||| || ||||| |||||||||||||| || ||| | ||||| |||||
Sbjct: 461 aaggagcgctttgctgaatcgaaaaaggagctcgatgctctcctttctgatgattccctg 520
Query: 506 gcaaacgttcctttcctcatactgggcaacaagattgacatcccatacgcggcttcagag 565
|||||||| || || ||||| || ||||| |||||||| |||||||| || || || ||
Sbjct: 521 gcaaacgtcccatttctcattcttggcaataagattgatatcccatatgctgcctctgaa 580
Query: 566 gaggagctgaggtactacctcggcctgagcaacttcacaaccgggaagggcaacgtgaac 625
|| |||||| |||| || | ||||| |||| ||||||||| ||||||||||| || | |
Sbjct: 581 gaagagctgcggtatcacttaggccttagcagcttcacaactgggaagggcaaggtcagc 640
Query: 626 ttggccgactccaatgtccggcccctggagatcttcatgtgcagtgtggtgcgcaagatg 685
| ||||||||||||||||| || ||| | |||||||||||||| || |||||||||
Sbjct: 641 ctttgtgactccaatgtccggcctcttgaggtgttcatgtgcagtgttgtccgcaagatg 700
Query: 686 ggctatggcgaaggcttcaaatggatgtctcagtacatcaa 726
|||||||| || || ||||| ||| | || |||||||||||
Sbjct: 701 ggctatggtgatgggttcaagtgggtctcccagtacatcaa 741
>gb|CN815005.1|CN815005 HRO4504_G12_N24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_G12_N24, mRNA sequence
Length = 633
Score = 192 bits (97), Expect = 5e-049
Identities = 287/349 (82%), Gaps = 1/349 (0%)
Strand = Plus / Plus
Query: 380 cgccgcgtctggaaggactactacgccaaggttgatgctgttgtgtacttggtggatgct 439
||||| |||||||| || |||||||| |||||||||||||| || |||||||| |||||
Sbjct: 4 cgccgagtctggaaaga-tactacgctaaggttgatgctgtagtatacttggtagatgca 62
Query: 440 gttgacaaggaacgttttgccgagtcgaagaaggagctcgatgcgcttcttgcagatgac 499
|||||||| || ||||| || ||||| |||||||||||||| || ||| | |||||
Sbjct: 63 tacgacaaggagcgctttgctgaatcgaaaaaggagctcgatgctctcctttctgatgat 122
Query: 500 tcccttgcaaacgttcctttcctcatactgggcaacaagattgacatcccatacgcggct 559
||||| |||||||| || || ||||| || ||||| |||||||| |||||||| || ||
Sbjct: 123 tccctggcaaacgtcccatttctcattcttggcaataagattgatatcccatatgctgcc 182
Query: 560 tcagaggaggagctgaggtactacctcggcctgagcaacttcacaaccgggaagggcaac 619
|| || || |||||| |||| || | ||||| |||||||||||||| |||||||||||
Sbjct: 183 tctgaagaagagctgcggtatcacttaggccttagcaacttcacaactgggaagggcaag 242
Query: 620 gtgaacttggccgactccaatgtccggcccctggagatcttcatgtgcagtgtggtgcgc 679
|| | | | | ||||||||||||||||| || ||| | |||||||||||||| || |||
Sbjct: 243 gtcagccttggtgactccaatgtccggcctcttgaggtgttcatgtgcagtgttgtccgc 302
Query: 680 aagatgggctatggcgaaggcttcaaatggatgtctcagtacatcaagt 728
|||||||||||||| || || ||||| ||| | || |||||||||||||
Sbjct: 303 aagatgggctatggtgatgggttcaagtgggtctcccagtacatcaagt 351
>gb|BE439315.1|BE439315 CDO1419_WHE05F05F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1419_WHE05, mRNA sequence
Length = 357
Score = 44.1 bits (22), Expect = 3e-004
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 106 gaagaggaagaggaagaggaagagga 131
||||||||||| ||||||||||||||
Sbjct: 186 gaagaggaagatgaagaggaagagga 161
>gb|BE439348.1|BE439348 CDO1419_WHE05F05R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1419_WHE05, mRNA sequence
Length = 337
Score = 44.1 bits (22), Expect = 3e-004
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaagaggaagagga 131
||||||||||| ||||||||||||||
Sbjct: 172 gaagaggaagatgaagaggaagagga 197
>gb|CN816026.1|CN816026 HRO4516_A12_B24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_A12_B24, mRNA sequence
Length = 609
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 81 gtcgtttgatctgctgc 97
|||||||||||||||||
Sbjct: 234 gtcgtttgatctgctgc 250
>gb|CN818057.1|CN818057 HRO4472_B09_C18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_B09_C18, mRNA sequence
Length = 801
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 112 gaagaggaagaggaaga 128
|||||||||||||||||
Sbjct: 163 gaagaggaagaggaaga 179
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaaga 122
|||||||||||||||||
Sbjct: 163 gaagaggaagaggaaga 179
>gb|CN819786.1|CN819786 HRO4404_A10_B20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_A10_B20, mRNA
sequence
Length = 665
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 112 gaagaggaagaggaaga 128
|||||||||||||||||
Sbjct: 50 gaagaggaagaggaaga 66
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 106 gaagaggaagaggaaga 122
|||||||||||||||||
Sbjct: 50 gaagaggaagaggaaga 66
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3038
Number of Sequences: 8143
Number of extensions: 3038
Number of successful extensions: 869
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 12
length of query: 1231
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1215
effective length of database: 4,572,175
effective search space: 5555192625
effective search space used: 5555192625
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)