BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2542097.2.1
(887 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817006.1|CN817006 HRO4527_C01_F01ZS5 Lib AA071E1X Aven... 163 3e-040
gb|CN816095.1|CN816095 HRO4516_H11_P22ZS5 Lib AA071E1X Aven... 68 1e-011
gb|CN815685.1|CN815685 HRO4514_D07_G14ZS5 Lib AA071E1X Aven... 62 9e-010
gb|CN814889.1|CN814889 HRO4503_F02_L03ZS5 Lib AA071E1X Aven... 38 0.013
gb|CN816481.1|CN816481 HRO4521_C04_E07ZS5 Lib AA071E1X Aven... 34 0.20
gb|CN816705.1|CN816705 HRO4523_G10_N19ZS5 Lib AA071E1X Aven... 34 0.20
gb|CN819579.1|CN819579 HRO4401_G09_M17ZS5 Lib AA069E1X Aven... 34 0.20
>gb|CN817006.1|CN817006 HRO4527_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_C01_F01, mRNA sequence
Length = 558
Score = 163 bits (82), Expect = 3e-040
Identities = 182/214 (85%), Gaps = 1/214 (0%)
Strand = Plus / Plus
Query: 251 cgtctacctcgct-gccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
||||||||||||| ||||||||||||||||||||||| ||| | || ||| ||||||| |
Sbjct: 11 cgtctacctcgctcgccgtcctcgagtacctcgccgcagaggttctggagctggcgggca 70
Query: 310 acgcagcgcgggacaacaagaagaaccggatcatcccgcgacacgtactgctggcgatcc 369
|||| || ||||||||||||| ||||||| | || | ||| | |||||||| ||||
Sbjct: 71 acgcggccaaggacaacaagaagtcccggatcgtgcccaggcacctgctgctggccatcc 130
Query: 370 gcaacgatgaggagctcgggaagctactggccggcgtcaccatcgcacacggcggggttc 429
||||||| |||||||||||| ||| || | ||| ||||||||||| |||||||| || |
Sbjct: 131 gcaacgaccaggagctcgggaggctgctcggcggggtcaccatcgcccacggcggcgtgc 190
Query: 430 tgcccaacatcaaccctgtgctgctccccaagaa 463
|||||||||||||||| |||||||||||||||||
Sbjct: 191 tgcccaacatcaacccggtgctgctccccaagaa 224
Score = 36.2 bits (18), Expect = 0.051
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 522 gccgccaagtcgcccaaaaagg 543
||||||||||||||||| ||||
Sbjct: 274 gccgccaagtcgcccaagaagg 295
>gb|CN816095.1|CN816095 HRO4516_H11_P22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_H11_P22, mRNA sequence
Length = 805
Score = 67.9 bits (34), Expect = 1e-011
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 321 gacaacaagaagaaccggatcatcccgcgacacgtactgctggcgatccgcaacgatgag 380
||||||||||||||||||||| | ||||| ||| | | ||||||| |||||||||| |||
Sbjct: 413 gacaacaagaagaaccggatcgtgccgcgccacatccagctggcggtccgcaacgacgag 354
Query: 381 gagctc 386
||||||
Sbjct: 353 gagctc 348
>gb|CN815685.1|CN815685 HRO4514_D07_G14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_D07_G14, mRNA sequence
Length = 449
Score = 61.9 bits (31), Expect = 9e-010
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 431 gcccaacatcaaccctgtgctgctccccaagaaaaccgc 469
||||||||||||||| ||||||||||||||||| |||||
Sbjct: 10 gcccaacatcaaccccgtgctgctccccaagaagaccgc 48
Score = 34.2 bits (17), Expect = 0.20
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 806 tgtgaatcactaggtgctgtttgtaataa 834
|||||||| |||| | |||||||||||||
Sbjct: 382 tgtgaatcgctagattctgtttgtaataa 410
>gb|CN814889.1|CN814889 HRO4503_F02_L03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_F02_L03, mRNA sequence
Length = 232
Score = 38.2 bits (19), Expect = 0.013
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 445 ctgtgctgctccccaagaa 463
|||||||||||||||||||
Sbjct: 18 ctgtgctgctccccaagaa 36
>gb|CN816481.1|CN816481 HRO4521_C04_E07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_C04_E07, mRNA sequence
Length = 439
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 233 tgtcggcaccggcgccc 249
|||||||||||||||||
Sbjct: 194 tgtcggcaccggcgccc 178
>gb|CN816705.1|CN816705 HRO4523_G10_N19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_G10_N19, mRNA sequence
Length = 714
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 233 tgtcggcaccggcgccc 249
|||||||||||||||||
Sbjct: 472 tgtcggcaccggcgccc 456
>gb|CN819579.1|CN819579 HRO4401_G09_M17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_G09_M17, mRNA
sequence
Length = 806
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 509 caagaaggccgccgccg 525
|||||||||||||||||
Sbjct: 162 caagaaggccgccgccg 178
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2240
Number of Sequences: 8143
Number of extensions: 2240
Number of successful extensions: 628
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 16
length of query: 887
length of database: 4,702,463
effective HSP length: 16
effective length of query: 871
effective length of database: 4,572,175
effective search space: 3982364425
effective search space used: 3982364425
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)