BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521589.2.1
(1689 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817202.1|CN817202 HRO4458_E08_J16ZS5 Lib AA070E1X Aven... 34 0.39
gb|CN819261.1|CN819261 HRO4451_H11_O21ZS5 Lib AA070E1X Aven... 34 0.39
>gb|CN817202.1|CN817202 HRO4458_E08_J16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_E08_J16, mRNA sequence
Length = 715
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1216 ccagccgggcctcctcc 1232
|||||||||||||||||
Sbjct: 501 ccagccgggcctcctcc 517
>gb|CN819261.1|CN819261 HRO4451_H11_O21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_H11_O21, mRNA sequence
Length = 801
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1216 ccagccgggcctcctcc 1232
|||||||||||||||||
Sbjct: 646 ccagccgggcctcctcc 630
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3797
Number of Sequences: 8143
Number of extensions: 3797
Number of successful extensions: 1006
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1002
Number of HSP's gapped (non-prelim): 4
length of query: 1689
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1672
effective length of database: 4,564,032
effective search space: 7631061504
effective search space used: 7631061504
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)