BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521462.2.2
(1311 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816204.1|CN816204 HRO4518_B02_C04ZS5 Lib AA071E1X Aven... 133 4e-031
>gb|CN816204.1|CN816204 HRO4518_B02_C04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_B02_C04, mRNA sequence
Length = 687
Score = 133 bits (67), Expect = 4e-031
Identities = 163/195 (83%)
Strand = Plus / Minus
Query: 838 gtgaagatttactgccctagatgtgaagacatctacactccaagatccaaatatctaagc 897
||||||||||||||||| | || ||||| ||||| ||| ||||||||||||| ||||
Sbjct: 675 gtgaagatttactgcccaaagtgcgaagatctctactatccgagatccaaatatcaaagc 616
Query: 898 aacatcgacgggacttactttgggacaacattcccccacttgttcctgatgacatacccg 957
|||||||| || ||||||||||||||||||| || ||||||| |||||||| |||||
Sbjct: 615 aacatcgatggagcttactttgggacaacatttcctcacttgtatctgatgacgtaccca 556
Query: 958 catttgaagccccagaagccgctgcagcaatacgttcccagggtatttgggttcaaaatc 1017
|| |||||||||||||||||| |||| |||| || ||||| || ||||| |||||| |
Sbjct: 555 cacttgaagccccagaagccgtcgcaggaatatgtccccagagtttttggattcaaactt 496
Query: 1018 cgtaagccatgacaa 1032
| |||||||| ||||
Sbjct: 495 cataagccataacaa 481
Score = 46.1 bits (23), Expect = 8e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1177 ttgatgcttgtggtttgtttagc 1199
|||||||||||||||||||||||
Sbjct: 269 ttgatgcttgtggtttgtttagc 247
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4515
Number of Sequences: 8143
Number of extensions: 4515
Number of successful extensions: 1164
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1162
Number of HSP's gapped (non-prelim): 2
length of query: 1311
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1295
effective length of database: 4,572,175
effective search space: 5920966625
effective search space used: 5920966625
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)