BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493645.2.1
(870 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815549.1|CN815549 HRO4512_H06_P12ZS5 Lib AA071E1X Aven... 42 8e-004
gb|CN820358.1|CN820358 HRO4418_D12_G24ZS5 Lib AA069E1X Aven... 36 0.050
>gb|CN815549.1|CN815549 HRO4512_H06_P12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4512_H06_P12, mRNA sequence
Length = 578
Score = 42.1 bits (21), Expect = 8e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 661 ctattattactactactacta 681
|||||||||||||||||||||
Sbjct: 562 ctattattactactactacta 542
>gb|CN820358.1|CN820358 HRO4418_D12_G24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_D12_G24, mRNA
sequence
Length = 812
Score = 36.2 bits (18), Expect = 0.050
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 264 tcttcttcctcgtcctcctcct 285
||||||||||| ||||||||||
Sbjct: 220 tcttcttcctcctcctcctcct 199
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3421
Number of Sequences: 8143
Number of extensions: 3421
Number of successful extensions: 949
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 945
Number of HSP's gapped (non-prelim): 3
length of query: 870
length of database: 4,702,463
effective HSP length: 16
effective length of query: 854
effective length of database: 4,572,175
effective search space: 3904637450
effective search space used: 3904637450
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)