BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478084.2.1
(1395 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB076980.1| Avena sativa AsHHT1 mRNA for hydroxyanthran... 670 0.0
dbj|AB076982.1| Avena sativa AsHHT3 mRNA for hydroxyanthran... 670 0.0
dbj|AB076981.1| Avena sativa AsHHT2 mRNA for hydroxyanthran... 565 e-161
dbj|AB076983.1| Avena sativa AsHHT4 mRNA for hydroxyanthran... 266 5e-071
gb|CN818904.1|CN818904 HRO4473_C04_XXXZS5 Lib AA070E1X Aven... 34 0.32
dbj|AB061327.1| Avena sativa LTR-retrotransposon OARE-1 gag... 34 0.32
>dbj|AB076980.1| Avena sativa AsHHT1 mRNA for hydroxyanthranilate
hydroxycinnamoyltransferase 1, complete cds
Length = 1755
Score = 670 bits (338), Expect = 0.0
Identities = 567/642 (88%), Gaps = 1/642 (0%)
Strand = Plus / Minus
Query: 277 tcagaagtcgtagatgagcttccggaacttctccatgtgctccgcctgcagcgagatggc 336
|||||||||| |||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1456 tcagaagtcgaagatcatcttccggaacttctccatgtgctcggcctgcagcgagatggc 1397
Query: 337 cacggacaggctgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtaggc 396
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1396 caccgacaggctgccgtcgcggttggcgctggggagcacgaaggcgagcccctcgtaggc 1337
Query: 397 gatgccgccggggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatggg 456
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 1336 gatgccgccggggcccatgaacacgggccggccccagccgaagtcggcgtcgtggatcgg 1277
Query: 457 caggcgcacccagctggtgagccccaggttggggcaccggaacgtgtgcgccccgcggac 516
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 1276 caggcgcacccagctggtgagcccgaggttggggcaccggaacgtgtgcgcgccgcggac 1217
Query: 517 cagcgccgacaggtccggctgcagctccaggtagtccagcgctgaccggcagtacccgtc 576
||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||
Sbjct: 1216 cagcgccgacaggtccggctgcagctctaggtagtccagcgccgagtggcagtactcgtc 1157
Query: 577 gtccatccggtccaacgcggcctggatcacggacgcgccctctgccaccccggccgtcac 636
||||||| |||| |||| |||||||| || ||| || || |||| | | | |||||
Sbjct: 1156 gtccatcttctccagcgcgtcctggatcgtggtcgccccgtccgccagcgagccggtcac 1097
Query: 637 cgtgccggcgttggccagcggcgtcgccgtgaaagatcacgttgccgaagtagccctccg 696
| |||| || | ||| |||||||| |||||| ||||| |||||||||||||| || || |
Sbjct: 1096 cttgcccgcctcggcgagcggcgtggccgtg-aagatgacgttgccgaagtacccgtcag 1038
Query: 697 gaagcggcggctgcagccgctgccgcccgtccgtggcgcagtacagcttggtgggctggt 756
| ||| |||| ||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 1037 ggtgcgtcggcgtcagccgctgccgcccgtccgtggcgcagtacagcttggttggctgct 978
Query: 757 cggccggcaggccgcgcgccagggacgcgcaccgccacacgtgcgccgccagcacagcgt 816
| | | ||| |||||||||||||||||||||||||||||||| ||| | ||||| ||||
Sbjct: 977 ccggggccagcccgcgcgccagggacgcgcaccgccacacgtgagccccgagcaccgcgt 918
Query: 817 acgtgctgaaccgcggcgcgccctcgcgcgcggggacctgcgaacggaggcggacgagct 876
||||||||||||| ||||||||||||| || ||||| ||| | |||||| ||| | || |
Sbjct: 917 acgtgctgaaccgtggcgcgccctcgcccgtggggagctgggcacggagccggcccaggt 858
Query: 877 cggcgcgggagagcttgaagatagccacggctgtgggcggcg 918
||| |||||| ||||||||||| ||||||| ||||||||||
Sbjct: 857 cggagcgggacagcttgaagatgtccacggccgtgggcggcg 816
Score = 119 bits (60), Expect = 7e-027
Identities = 147/176 (83%)
Strand = Plus / Minus
Query: 960 agcatggcgggcgccggctggtactcgatgtgcgggtagcccggggtcggcggatcgcgc 1019
||||||||||| || |||||||||||||||||||||| | ||| |||||| || ||
Sbjct: 774 agcatggcgggggcgggctggtactcgatgtgcgggtgggttgggaccggcgggtcacgg 715
Query: 1020 gcgcggaggagcgaccggtcaatgaagggcatgccggcgatcgggacgccgcggcagagg 1079
|| || ||||| | ||||| ||||| |||||| | ||||||||||| || || ||||||
Sbjct: 714 gcccgtaggagggtgcggtcgatgaacggcatgacagcgatcgggacaccacgacagagg 655
Query: 1080 tccgcccacgagttgatgaagtgcagtccggagaagccgccggccacgtggtgctg 1135
|| | ||| ||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct: 654 tcggaccatgagttgatgaagtgcaggccggagaagccgtcggcgacgtggtgctg 599
Score = 99.6 bits (50), Expect = 7e-021
Identities = 74/82 (90%)
Strand = Plus / Minus
Query: 1165 cacttgaagtgggtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaag 1224
|||||||||||||||||||||| |||||| || ||| ||||||||||| | | ||||||
Sbjct: 570 cacttgaagtgggtcacctggaccacgaggagtgggtaggaggagatgcccccggtgaag 511
Query: 1225 tcgacggtggggatgaggcgct 1246
||||||||||||||||||||||
Sbjct: 510 tcgacggtggggatgaggcgct 489
>dbj|AB076982.1| Avena sativa AsHHT3 mRNA for hydroxyanthranilate
hydroxycinnamoyltransferase 3, complete cds
Length = 1659
Score = 670 bits (338), Expect = 0.0
Identities = 567/642 (88%), Gaps = 1/642 (0%)
Strand = Plus / Minus
Query: 277 tcagaagtcgtagatgagcttccggaacttctccatgtgctccgcctgcagcgagatggc 336
|||||||||| |||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1329 tcagaagtcgaagatcatcttccggaacttctccatgtgctcggcctgcagcgagatggc 1270
Query: 337 cacggacaggctgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtaggc 396
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1269 caccgacaggctgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtaggc 1210
Query: 397 gatgccgccggggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatggg 456
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 1209 gatgccgccggggcccatgaacacgggccggccccagccgaagtcggcgtcgtggatcgg 1150
Query: 457 caggcgcacccagctggtgagccccaggttggggcaccggaacgtgtgcgccccgcggac 516
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 1149 caggcgcacccagctggtgagcccgaggttggggcaccggaacgtgtgcgcgccgcggac 1090
Query: 517 cagcgccgacaggtccggctgcagctccaggtagtccagcgctgaccggcagtacccgtc 576
||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||
Sbjct: 1089 cagcgccgacaggtccggctgcagctctaggtagtccagcgccgagtggcagtactcgtc 1030
Query: 577 gtccatccggtccaacgcggcctggatcacggacgcgccctctgccaccccggccgtcac 636
||||||| |||| |||| |||||||| || ||| || || |||| | | | |||||
Sbjct: 1029 gtccatcttctccagcgcgtcctggatcgtggtcgcaccgtccgccagcgagccggtcac 970
Query: 637 cgtgccggcgttggccagcggcgtcgccgtgaaagatcacgttgccgaagtagccctccg 696
| |||| || | ||| |||||||| |||||| ||||| ||||| |||||||| || || |
Sbjct: 969 cttgcccgcctcggcgagcggcgtggccgtg-aagatgacgttcccgaagtaaccgtcag 911
Query: 697 gaagcggcggctgcagccgctgccgcccgtccgtggcgcagtacagcttggtgggctggt 756
|||| | |||| ||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 910 gaagggtcggcgtcagccgctgccgcccgtccgtggcgcagtacagcttggttggctgct 851
Query: 757 cggccggcaggccgcgcgccagggacgcgcaccgccacacgtgcgccgccagcacagcgt 816
| | | ||| |||||||||||||||||||||||||||||||| ||| | ||||| ||||
Sbjct: 850 ccggggccagcccgcgcgccagggacgcgcaccgccacacgtgagccccgagcaccgcgt 791
Query: 817 acgtgctgaaccgcggcgcgccctcgcgcgcggggacctgcgaacggaggcggacgagct 876
||||||||||||| ||||||||||||| || ||||| ||| | ||||| ||| | || |
Sbjct: 790 acgtgctgaaccgtggcgcgccctcgcccgtggggagctgggcgcggagccggcccaggt 731
Query: 877 cggcgcgggagagcttgaagatagccacggctgtgggcggcg 918
||| |||||| ||||||||||| ||||||| ||||||||||
Sbjct: 730 cggagcgggacagcttgaagatgtccacggccgtgggcggcg 689
Score = 135 bits (68), Expect = 1e-031
Identities = 149/176 (84%)
Strand = Plus / Minus
Query: 960 agcatggcgggcgccggctggtactcgatgtgcgggtagcccggggtcggcggatcgcgc 1019
|||||||||||||| |||||||||||||||||||||| | |||| |||||| || ||
Sbjct: 647 agcatggcgggcgcgggctggtactcgatgtgcgggtgggtcgggaccggcgggtcacgg 588
Query: 1020 gcgcggaggagcgaccggtcaatgaagggcatgccggcgatcgggacgccgcggcagagg 1079
|| |||||||| | ||||| ||||| |||||| | ||||||||||| || || ||||||
Sbjct: 587 gcccggaggagggtgcggtcgatgaacggcatgacagcgatcgggacaccacgacagagg 528
Query: 1080 tccgcccacgagttgatgaagtgcagtccggagaagccgccggccacgtggtgctg 1135
|| | ||| |||||||| |||||||| |||||||||||| |||| |||||||||||
Sbjct: 527 tcggaccatgagttgataaagtgcaggccggagaagccgtcggcgacgtggtgctg 472
Score = 107 bits (54), Expect = 3e-023
Identities = 75/82 (91%)
Strand = Plus / Minus
Query: 1165 cacttgaagtgggtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaag 1224
|||||||||||||||||||||| |||||| |||||| ||||||||||| | | ||||||
Sbjct: 443 cacttgaagtgggtcacctggaccacgaggagcgggtaggaggagatgcccccggtgaag 384
Query: 1225 tcgacggtggggatgaggcgct 1246
||||||||||||||||||||||
Sbjct: 383 tcgacggtggggatgaggcgct 362
>dbj|AB076981.1| Avena sativa AsHHT2 mRNA for hydroxyanthranilate
hydroxycinnamoyltransferase 2, complete cds
Length = 1770
Score = 565 bits (285), Expect = e-161
Identities = 562/653 (86%), Gaps = 1/653 (0%)
Strand = Plus / Minus
Query: 277 tcagaagtcgtagatgagcttccggaacttctccatgtgctccgcctgcagcgagatggc 336
|||||||||| |||| | |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1476 tcagaagtcgaagatcatcttccggaacttctccatgtgctcggcctgcagcgagatggc 1417
Query: 337 cacggacaggctgccgtcgcggttggcgctggggagcacgaacgcgagcccctcgtaggc 396
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1416 caccgacaggctgccgtcgcggttggcgctggggagcacgaaggcgagcccctcgtaggc 1357
Query: 397 gatgccgccggggcccatgaacacgggccgcccccacccgaagtccgcgtcgtggatggg 456
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 1356 gatgccgccggggcccatgaacacgggccggccccagccgaagtcggcgtcgtggatcgg 1297
Query: 457 caggcgcacccagctggtgagccccaggttggggcaccggaacgtgtgcgccccgcggac 516
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 1296 caggcgcacccagctggtgagcccgaggttggggcaccggaacgtgtgtgcgccgcggac 1237
Query: 517 cagcgccgacaggtccggctgcagctccaggtagtccagcgctgaccggcagtacccgtc 576
||| || || ||||| |||||||| || |||||||| || || || |||||||| ||||
Sbjct: 1236 cagagctgataggtctggctgcagttctaggtagtctagagcagagtggcagtactcgtc 1177
Query: 577 gtccatccggtccaacgcggcctggatcacggacgcgccctctgccaccccggccgtcac 636
||||||| |||| ||| |||||||| || |||||| ||||||| | | | |||||
Sbjct: 1176 gtccatcttctccagcgcctcctggatcgtggtcgcgccgtctgccagcgagccggtcac 1117
Query: 637 cgtgccggcgttggccagcggcgtcgccgtgaaagatcacgttgccgaagtagccctccg 696
| |||| || | ||| |||||||| || ||| ||||| | ||||||||||| || || |
Sbjct: 1116 cttgcccgcctcggcgagcggcgtggcggtg-aagatggcattgccgaagtatccatcag 1058
Query: 697 gaagcggcggctgcagccgctgccgcccgtccgtggcgcagtacagcttggtgggctggt 756
| || | |||| ||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 1057 ggagggtcggcgtcagccgctgccgcccgtccgttgcgcagtacagcttggttggctgct 998
Query: 757 cggccggcaggccgcgcgccagggacgcgcaccgccacacgtgcgccgccagcacagcgt 816
| | | ||| ||||| |||| ||||||||||||||||||||| ||| | ||||| ||||
Sbjct: 997 ccggggccagcccgcgtgccatggacgcgcaccgccacacgtgagccccgagcaccgcgt 938
Query: 817 acgtgctgaaccgcggcgcgccctcgcgcgcggggacctgcgaacggaggcggacgagct 876
||||||||||||||||||| ||||||| || ||||| ||| | ||||| ||| | || |
Sbjct: 937 acgtgctgaaccgcggcgcaccctcgcccgtggggagctgggcgcggagccggcccaggt 878
Query: 877 cggcgcgggagagcttgaagatagccacggctgtgggcggcgtcgccggcttg 929
| | |||||| ||||||||||| |||||||||||||||||| | ||||||||
Sbjct: 877 cagagcgggacagcttgaagatgtccacggctgtgggcggcgactccggcttg 825
Score = 129 bits (65), Expect = 7e-030
Identities = 146/173 (84%)
Strand = Plus / Minus
Query: 960 agcatggcgggcgccggctggtactcgatgtgcgggtagcccggggtcggcggatcgcgc 1019
|||||||||||||| |||||||||||||||||||||| | |||| |||||| || ||
Sbjct: 794 agcatggcgggcgcgggctggtactcgatgtgcgggtgggtcgggaccggcgggtcacgg 735
Query: 1020 gcgcggaggagcgaccggtcaatgaagggcatgccggcgatcgggacgccgcggcagagg 1079
|| |||||||| | ||||| ||||| |||||| | ||||||||||| ||||| |||| |
Sbjct: 734 gcccggaggagggtgcggtcgatgaacggcatgaccgcgatcgggacaccgcgacagatg 675
Query: 1080 tccgcccacgagttgatgaagtgcagtccggagaagccgccggccacgtggtg 1132
|| | ||| ||||||||||||||||| |||||||||||| | || ||||||||
Sbjct: 674 tcggaccatgagttgatgaagtgcaggccggagaagccgtcagcgacgtggtg 622
Score = 99.6 bits (50), Expect = 7e-021
Identities = 74/82 (90%)
Strand = Plus / Minus
Query: 1165 cacttgaagtgggtcacctggagcacgagcagcgggaaggaggagatgtcgtccgtgaag 1224
||||||||||||||||||||| |||||| |||||| ||||||||||| | | ||||||
Sbjct: 590 cacttgaagtgggtcacctgggccacgaggagcgggtaggaggagatgcccccggtgaag 531
Query: 1225 tcgacggtggggatgaggcgct 1246
||||||||||||||||||||||
Sbjct: 530 tcgacggtggggatgaggcgct 509
>dbj|AB076983.1| Avena sativa AsHHT4 mRNA for hydroxyanthranilate
hydroxycinnamoyltransferase 4, partial cds
Length = 1100
Score = 266 bits (134), Expect = 5e-071
Identities = 242/278 (87%)
Strand = Plus / Minus
Query: 293 agcttccggaacttctccatgtgctccgcctgcagcgagatggccacggacaggctgccg 352
|||||||||||||||||||||||||| ||||||| ||||||||| | |||||||||||||
Sbjct: 894 agcttccggaacttctccatgtgctcggcctgcaacgagatggcgatggacaggctgccg 835
Query: 353 tcgcggttggcgctggggagcacgaacgcgagcccctcgtaggcgatgccgccggggccc 412
|| ||| ||||| ||||| |||||||| |||||||| ||||| ||||| || || |||
Sbjct: 834 tccttgttcgcgctcgggaggacgaacgccagcccctcataggcaatgccaccaggaccc 775
Query: 413 atgaacacgggccgcccccacccgaagtccgcgtcgtggatgggcaggcgcacccagctg 472
|||||||||||||||||||| ||||| || |||| |||||| ||||||||||||||||||
Sbjct: 774 atgaacacgggccgcccccaaccgaaatcggcgttgtggatcggcaggcgcacccagctg 715
Query: 473 gtgagccccaggttggggcaccggaacgtgtgcgccccgcggaccagcgccgacaggtcc 532
||||| || ||||| ||||||||||| ||||| || |||||||||| || |||| |||
Sbjct: 714 gtgaggccgaggttagggcaccggaaggtgtgggctccgcggaccaatgctgacaaatcc 655
Query: 533 ggctgcagctccaggtagtccagcgctgaccggcagta 570
|||||| |||||||||||||| |||||| ||||||||
Sbjct: 654 ggctgcgtctccaggtagtccaacgctgagcggcagta 617
Score = 131 bits (66), Expect = 2e-030
Identities = 190/230 (82%), Gaps = 1/230 (0%)
Strand = Plus / Minus
Query: 669 aagatcacgttgccgaagtagccctccggaagcggcggctgcagccgctgccgcccgtcc 728
||||| ||||| |||||||| |||||||| | ||| ||||||||||| || ||||||||
Sbjct: 521 aagatgacgtttccgaagtaaccctccggcaacgg-ggctgcagccgatgtcgcccgtcg 463
Query: 729 gtggcgcagtacagcttggtgggctggtcggccggcaggccgcgcgccagggacgcgcac 788
||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||| | ||
Sbjct: 462 gtggcacagtacagcttggtgggctgttcggcaggcaggccacgcgcaagggagacacag 403
Query: 789 cgccacacgtgcgccgccagcacagcgtacgtgctgaaccgcggcgcgccctcgcgcgcg 848
||||| || || || || || ||||||||||||||||| ||||| || || || | || |
Sbjct: 402 cgccagacatgtgcggctagaacagcgtacgtgctgaaacgcggtgcaccttcacccgtg 343
Query: 849 gggacctgcgaacggaggcggacgagctcggcgcgggagagcttgaagat 898
|||| ||||| || |||||| | ||||| | ||||| ||||||||||||
Sbjct: 342 gggagctgcgcgcgcaggcggccaagctccgagcgggtgagcttgaagat 293
Score = 36.2 bits (18), Expect = 0.081
Identities = 33/38 (86%)
Strand = Plus / Minus
Query: 1071 cggcagaggtccgcccacgagttgatgaagtgcagtcc 1108
||||||||||| | ||| ||||||||||| || |||||
Sbjct: 123 cggcagaggtcagaccaagagttgatgaaatgaagtcc 86
>gb|CN818904.1|CN818904 HRO4473_C04_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_C04_XXX, mRNA sequence
Length = 851
Score = 34.2 bits (17), Expect = 0.32
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1196 gcgggaaggaggagatg 1212
|||||||||||||||||
Sbjct: 438 gcgggaaggaggagatg 454
>dbj|AB061327.1| Avena sativa LTR-retrotransposon OARE-1 gag-pol pseudogene for
polyprotein
Length = 8665
Score = 34.2 bits (17), Expect = 0.32
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1199 ggaaggaggagatgtcg 1215
|||||||||||||||||
Sbjct: 1449 ggaaggaggagatgtcg 1465
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2266
Number of Sequences: 8143
Number of extensions: 2266
Number of successful extensions: 643
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 28
length of query: 1395
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1379
effective length of database: 4,572,175
effective search space: 6305029325
effective search space used: 6305029325
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)