BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478065.2.2
(688 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815860.1|CN815860 HRO4511_C09_F17ZS5 Lib AA071E1X Aven... 345 3e-095
gb|CN815714.1|CN815714 HRO4514_G01_M02ZS5 Lib AA071E1X Aven... 321 5e-088
gb|CN821620.1|CN821620 HRO4408_D02_H04Z Lib AA069E1X Avena ... 272 4e-073
gb|CN816546.1|CN816546 HRO4522_A04_A08ZS5 Lib AA071E1X Aven... 260 1e-069
gb|CN820862.1|CN820862 HRO4420_G10_N20ZS5 Lib AA069E1X Aven... 176 2e-044
gb|CN821061.1|CN821061 HRO4427_B01_D01ZS5 Lib AA069E1X Aven... 36 0.040
>gb|CN815860.1|CN815860 HRO4511_C09_F17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_C09_F17, mRNA sequence
Length = 587
Score = 345 bits (174), Expect = 3e-095
Identities = 327/378 (86%)
Strand = Plus / Plus
Query: 157 gtgaagaagcgggtcaagcagttcaagaggccccacctcgaccgctacaagtgcctcaag 216
||||||||| ||||||| || ||||||||| |||| ||||||||||| ||||||||
Sbjct: 11 gtgaagaagagggtcaaacaattcaagagggcccatagcgaccgctacattggcctcaag 70
Query: 217 ccaagctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgc 276
| |||||||||||||| |||||||| || |||||||||||||| |||||||||||| |
Sbjct: 71 actagctggcgcaggccgaagggtattgattcccgtgtcaggcgaaagttcaagggagtc 130
Query: 277 accttgatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaac 336
|| |||||||| |||||||| || || || ||||||||||||||||| || ||||| |||
Sbjct: 131 acgttgatgcccaacattggctacgggtcagacaagaagaccaggcattaccttcctaac 190
Query: 337 aagtttaagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaac 396
||||| |||||||| || || ||||| |||||||||||||| |||| ||||||||||||
Sbjct: 191 aagttcaagaagttcgttgtccacaacatttctgagctggagctgctcatgatgcacaac 250
Query: 397 aggacatactgtgctgaaatcgcacacaacgtgtccactaagaagcgcaaggaaatcgtg 456
||||| |||||||| || ||||| |||||||| ||||| |||||||||||||| |||||
Sbjct: 251 aggacctactgtgcggagatcgcccacaacgtctccacgaagaagcgcaaggacatcgtt 310
Query: 457 gagcgagctgctcagcttgacattgtggtcaccaataagcttgcccgtctccgcagccag 516
||||| ||||| ||||||||||| ||||||||||| ||||||||| | ||||||||||||
Sbjct: 311 gagcgtgctgcgcagcttgacatcgtggtcaccaacaagcttgccaggctccgcagccag 370
Query: 517 gaagatgagtaaactgtt 534
|| |||||||| ||||||
Sbjct: 371 gaggatgagtagactgtt 388
>gb|CN815714.1|CN815714 HRO4514_G01_M02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_G01_M02, mRNA sequence
Length = 643
Score = 321 bits (162), Expect = 5e-088
Identities = 342/402 (85%)
Strand = Plus / Plus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
||||||||||||| ||| |||| |||||||||||||||||| |||||| |||||||
Sbjct: 34 agatggcggtgcctctgctgacggcgaagatcgtgaagaagcgtaccaagcacttcaaga 93
Query: 185 ggccccacctcgaccgctacaagtgcctcaagccaagctggcgcaggcccaagggtatcg 244
|| |||| ||| ||||||| |||||||||| ||||||||| |||| |||||||| |
Sbjct: 94 gggcccatagcgatcgctacatcggcctcaagcccagctggcgccggccaaagggtattg 153
Query: 245 actcccgtgtcaggcggaagttcaagggatgcaccttgatgcctaacattggatatggct 304
|||||||||| ||| | |||||||||||||| ||||||||||| |||||||| || || |
Sbjct: 154 actcccgtgtaaggagaaagttcaagggatgtaccttgatgcccaacattggttacggtt 213
Query: 305 ctgacaagaagaccaggcactatcttcccaacaagtttaagaagtttgtcgtgcacaatg 364
||||||||||||||||||| || || ||||||||||| |||||||||||||| ||||| |
Sbjct: 214 ctgacaagaagaccaggcattacctgcccaacaagttcaagaagtttgtcgtccacaacg 273
Query: 365 tttctgagctggagttgcttatgatgcacaacaggacatactgtgctgaaatcgcacaca 424
| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct: 274 tctctgagctggagttgcttatgatgcacaacaggacatattgtgctgagatcgcgcaca 333
Query: 425 acgtgtccactaagaagcgcaaggaaatcgtggagcgagctgctcagcttgacattgtgg 484
| || || | ||||||| |||| || |||||||| ||||| ||||| || || || |
Sbjct: 334 atgtctcttcccagaagcgtaaggtcattgtggagcgtgctgcgcagctggatatcgttg 393
Query: 485 tcaccaataagcttgcccgtctccgcagccaggaagatgagt 526
|||| || ||||||||| | |||||||||||||| |||||||
Sbjct: 394 tcacaaacaagcttgccaggctccgcagccaggaggatgagt 435
>gb|CN821620.1|CN821620 HRO4408_D02_H04Z Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D02_H04, mRNA
sequence
Length = 477
Score = 272 bits (137), Expect = 4e-073
Identities = 245/281 (87%)
Strand = Plus / Plus
Query: 247 tcccgtgtcaggcggaagttcaagggatgcaccttgatgcctaacattggatatggctct 306
|||||||||||||| |||||||||||| ||| |||||||| |||||||| || || ||
Sbjct: 14 tcccgtgtcaggcgaaagttcaagggagtcacattgatgcccaacattggctacgggtca 73
Query: 307 gacaagaagaccaggcactatcttcccaacaagtttaagaagtttgtcgtgcacaatgtt 366
||||||||||||||||| || ||||| |||||||| ||||||||||| || ||||| |
Sbjct: 74 gacaagaagaccaggcattaccttcctaacaagttcaagaagtttgttgtccacaacatc 133
Query: 367 tctgagctggagttgcttatgatgcacaacaggacatactgtgctgaaatcgcacacaac 426
|||||||||||| |||| ||||||||||||||||| |||||||| || || || ||||||
Sbjct: 134 tctgagctggagctgctcatgatgcacaacaggacctactgtgcggagattgcccacaac 193
Query: 427 gtgtccactaagaagcgcaaggaaatcgtggagcgagctgctcagcttgacattgtggtc 486
|| ||||| |||||||||||||| ||||| ||||| ||||| ||||||||||| ||||||
Sbjct: 194 gtctccacgaagaagcgcaaggacatcgttgagcgtgctgcgcagcttgacatcgtggtc 253
Query: 487 accaataagcttgcccgtctccgcagccaggaagatgagta 527
||||| ||||||||| | |||||||||||||| ||||||||
Sbjct: 254 accaacaagcttgccaggctccgcagccaggaggatgagta 294
>gb|CN816546.1|CN816546 HRO4522_A04_A08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_A04_A08, mRNA sequence
Length = 639
Score = 260 bits (131), Expect = 1e-069
Identities = 215/243 (88%)
Strand = Plus / Plus
Query: 276 caccttgatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaa 335
|||||||||||| ||||| ||||| || ||||||||||||||||||||||| || |||||
Sbjct: 6 caccttgatgcccaacatcggatacggttctgacaagaagaccaggcactacctgcccaa 65
Query: 336 caagtttaagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaa 395
|||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 66 caagttcaagaagtttgtggtgcacaatgtctctgagctggagctgcttatgatgcacaa 125
Query: 396 caggacatactgtgctgaaatcgcacacaacgtgtccactaagaagcgcaaggaaatcgt 455
|||||| |||||||| || |||||||||||||||||||| ||||||||||| || ||
Sbjct: 126 caggacgtactgtgccgagatcgcacacaacgtgtccacgcagaagcgcaagacgatagt 185
Query: 456 ggagcgagctgctcagcttgacattgtggtcaccaataagcttgcccgtctccgcagcca 515
|||||| || || ||||| ||||| ||||||||||| ||||| ||| | |||||||||||
Sbjct: 186 ggagcgtgccgcccagctcgacatcgtggtcaccaacaagctcgccaggctccgcagcca 245
Query: 516 gga 518
|||
Sbjct: 246 gga 248
>gb|CN820862.1|CN820862 HRO4420_G10_N20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_G10_N20, mRNA
sequence
Length = 427
Score = 176 bits (89), Expect = 2e-044
Identities = 158/181 (87%)
Strand = Plus / Plus
Query: 338 agtttaagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaaca 397
|||| ||||||||| | |||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 1 agttcaagaagtttttgctgcacaatgtctctgagctggagctgcttatgatgcacaaca 60
Query: 398 ggacatactgtgctgaaatcgcacacaacgtgtccactaagaagcgcaaggaaatcgtgg 457
|||| ||||||||||| |||||||| |||||||||||| ||||||||||| || ||||
Sbjct: 61 ggacgtactgtgctgagatcgcacataacgtgtccactcagaagcgcaagacgatagtgg 120
Query: 458 agcgagctgctcagcttgacattgtggtcaccaataagcttgcccgtctccgcagccagg 517
|||| || || ||||| ||||| ||||||||||| ||||| ||| | |||||||||||||
Sbjct: 121 agcgtgccgcccagctcgacatcgtggtcaccaacaagctcgccaggctccgcagccagg 180
Query: 518 a 518
|
Sbjct: 181 a 181
>gb|CN821061.1|CN821061 HRO4427_B01_D01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_B01_D01, mRNA
sequence
Length = 408
Score = 36.2 bits (18), Expect = 0.040
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 148 cagaagatcgtgaagaag 165
||||||||||||||||||
Sbjct: 43 cagaagatcgtgaagaag 60
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1689
Number of Sequences: 8143
Number of extensions: 1689
Number of successful extensions: 403
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 6
length of query: 688
length of database: 4,702,463
effective HSP length: 16
effective length of query: 672
effective length of database: 4,572,175
effective search space: 3072501600
effective search space used: 3072501600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)