BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455940.2.2
(1190 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-Co... 383 e-106
gb|CN816997.1|CN816997 HRO4527_B04_D07ZS5 Lib AA071E1X Aven... 62 1e-009
gb|CN821486.1|CN821486 HRO4425_H04_O07ZS5 Lib AA069E1X Aven... 40 0.004
gb|BE439366.1|BE439366 CDO1090_WHE05F10R ITEC CDO Oat cDNA ... 38 0.018
gb|CN180767.1|CN180767 As02_cdo1090_C ITEC CDO Oat cDNA Lib... 38 0.018
gb|CN816040.1|CN816040 HRO4516_C03_F06ZS5 Lib AA071E1X Aven... 38 0.018
gb|CN821468.1|CN821468 HRO4425_F10_K19ZS5 Lib AA069E1X Aven... 38 0.018
gb|CN816276.1|CN816276 HRO4518_H08_O16ZS5 Lib AA071E1X Aven... 36 0.069
gb|AA231642.1|AA231642 CDO20.F cDNA from oat Avena sativa c... 34 0.27
gb|BE439040.1|BE439040 CDO20_WHE2C0041F ITEC CDO Oat cDNA L... 34 0.27
gb|BE439080.1|BE439080 CDO20_WHE2C0042F ITEC CDO Oat cDNA L... 34 0.27
gb|CN819684.1|CN819684 HRO4402_H12_O24ZS5 Lib AA069E1X Aven... 34 0.27
gb|CN819840.1|CN819840 HRO4404_F10_L20ZS5 Lib AA069E1X Aven... 34 0.27
>dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-CoA 3-O-methyltransferase,
partial cds
Length = 622
Score = 383 bits (193), Expect = e-106
Identities = 331/377 (87%)
Strand = Plus / Plus
Query: 513 tgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggccccgcgctcccc 572
|||||| | ||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 18 tgcatcgagaaggccggcgtggcgcacaagatcgacttccgcgagggccccgcgctgccc 77
Query: 573 gtcctggacgacctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtg 632
|| ||||||| || | | |||| ||| | ||||| | |||||||||| ||||||
Sbjct: 78 gtgctggacgcgctgctcgaggacgaggccaaccacggcaccttcgacttcgtcttcgtc 137
Query: 633 gacgccgacaaggacaactacctcagctaccacgagcggctcctgaagctggtgaggccc 692
||||| ||||||||||||||||||| ||||||| |||| ||| ||||||| || ||| |
Sbjct: 138 gacgcggacaaggacaactacctcaactaccaccagcgcctcatgaagctcgtcagggtc 197
Query: 693 ggcggcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgac 752
|||||||| | || |||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 198 ggcggcctgctaggatacgacaacacgctctggaacggctccgtcgtgctccccgccgac 257
Query: 753 gcgcccatgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcg 812
||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||
Sbjct: 258 gcgcccatgcgcaagtacatccgctactaccgcgacttcgtcctcgagctcaacaaggcc 317
Query: 813 ctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctc 872
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 318 ctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcatcacactc 377
Query: 873 tgccgccgcgtcaagtg 889
|||||||||| ||||||
Sbjct: 378 tgccgccgcgccaagtg 394
>gb|CN816997.1|CN816997 HRO4527_B04_D07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_B04_D07, mRNA sequence
Length = 423
Score = 61.9 bits (31), Expect = 1e-009
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||||||||||| ||||||||| | ||||||||||||| ||||||| ||||||| |
Sbjct: 43 tcgccgccgacgagcgcgtcgagcccgtacagctccccgtcgccgacggcatcacgctat 102
Query: 874 gccgccg 880
|||||||
Sbjct: 103 gccgccg 109
>gb|CN821486.1|CN821486 HRO4425_H04_O07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_H04_O07, mRNA
sequence
Length = 469
Score = 40.1 bits (20), Expect = 0.004
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 356 cctcaacatgctcatcaagctcat 379
||||||||| ||||||||||||||
Sbjct: 43 cctcaacatcctcatcaagctcat 66
>gb|BE439366.1|BE439366 CDO1090_WHE05F10R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1090_WHE05, mRNA sequence
Length = 273
Score = 38.2 bits (19), Expect = 0.018
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 386 caagaagaccatggagatc 404
|||||||||||||||||||
Sbjct: 165 caagaagaccatggagatc 183
>gb|CN180767.1|CN180767 As02_cdo1090_C ITEC CDO Oat cDNA Library Avena sativa cDNA clone
As02_cdo1090, mRNA sequence
Length = 678
Score = 38.2 bits (19), Expect = 0.018
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 386 caagaagaccatggagatc 404
|||||||||||||||||||
Sbjct: 163 caagaagaccatggagatc 181
>gb|CN816040.1|CN816040 HRO4516_C03_F06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_C03_F06, mRNA sequence
Length = 720
Score = 38.2 bits (19), Expect = 0.018
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 386 caagaagaccatggagatc 404
|||||||||||||||||||
Sbjct: 153 caagaagaccatggagatc 171
>gb|CN821468.1|CN821468 HRO4425_F10_K19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_F10_K19, mRNA
sequence
Length = 857
Score = 38.2 bits (19), Expect = 0.018
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 386 caagaagaccatggagatc 404
|||||||||||||||||||
Sbjct: 46 caagaagaccatggagatc 64
>gb|CN816276.1|CN816276 HRO4518_H08_O16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_H08_O16, mRNA sequence
Length = 372
Score = 36.2 bits (18), Expect = 0.069
Identities = 54/66 (81%)
Strand = Plus / Plus
Query: 812 gctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgct 871
||||||||||||| ||| ||||| ||||||||||| || ||| ||| || ||||| |
Sbjct: 49 gctcgccgccgacccgcgcatcgaggtctgccagctcgccatcgccgatggggtcaccat 108
Query: 872 ctgccg 877
||||||
Sbjct: 109 ctgccg 114
>gb|AA231642.1|AA231642 CDO20.F cDNA from oat Avena sativa cDNA clone CDO20, mRNA sequence
Length = 371
Score = 34.2 bits (17), Expect = 0.27
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 360 aacatgctcatcaagct 376
|||||||||||||||||
Sbjct: 296 aacatgctcatcaagct 312
>gb|BE439040.1|BE439040 CDO20_WHE2C0041F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO20_WHE2C0041, mRNA sequence
Length = 313
Score = 34.2 bits (17), Expect = 0.27
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 360 aacatgctcatcaagct 376
|||||||||||||||||
Sbjct: 263 aacatgctcatcaagct 279
>gb|BE439080.1|BE439080 CDO20_WHE2C0042F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO20_WHE2C0042, mRNA sequence
Length = 290
Score = 34.2 bits (17), Expect = 0.27
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 360 aacatgctcatcaagct 376
|||||||||||||||||
Sbjct: 268 aacatgctcatcaagct 284
>gb|CN819684.1|CN819684 HRO4402_H12_O24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_H12_O24, mRNA
sequence
Length = 604
Score = 34.2 bits (17), Expect = 0.27
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 631 tggacgccgacaaggac 647
|||||||||||||||||
Sbjct: 185 tggacgccgacaaggac 201
>gb|CN819840.1|CN819840 HRO4404_F10_L20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_F10_L20, mRNA
sequence
Length = 513
Score = 34.2 bits (17), Expect = 0.27
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 631 tggacgccgacaaggac 647
|||||||||||||||||
Sbjct: 107 tggacgccgacaaggac 123
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2583
Number of Sequences: 8143
Number of extensions: 2583
Number of successful extensions: 623
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 15
length of query: 1190
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1174
effective length of database: 4,572,175
effective search space: 5367733450
effective search space used: 5367733450
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)