BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2455820.2.1
         (1312 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816483.1|CN816483  HRO4521_C06_E11ZS5 Lib AA071E1X Aven...    64   3e-010
gb|CN820984.1|CN820984  HRO4422_B12_C24ZS5 Lib AA069E1X Aven...    36   0.076
gb|CN814705.1|CN814705  HRO4501_F02_K03ZS5 Lib AA071E1X Aven...    34   0.30 
gb|CN815072.1|CN815072  HRO4505_E09_I17ZS5 Lib AA071E1X Aven...    34   0.30 
gb|CN816762.1|CN816762  HRO4524_E03_J06ZS5 Lib AA071E1X Aven...    34   0.30 
gb|CN820684.1|CN820684  HRO4416_C12_F24ZS5 Lib AA069E1X Aven...    34   0.30 
gb|CN820717.1|CN820717  HRO4416_G05_N10ZS5 Lib AA069E1X Aven...    34   0.30 
gb|CN821556.1|CN821556  HRO4426_F09_K18ZS5 Lib AA069E1X Aven...    34   0.30 

>gb|CN816483.1|CN816483 HRO4521_C06_E11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4521_C06_E11, mRNA sequence
          Length = 356

 Score = 63.9 bits (32), Expect = 3e-010
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 369 cttgcgataatccttgtccgtgccgaacaaccagtccatgtaaacaaa 416
           |||||| ||| |||| |||||||| |||||||||||||||||||||||
Sbjct: 54  cttgcggtaacccttatccgtgccaaacaaccagtccatgtaaacaaa 7



>gb|CN820984.1|CN820984 HRO4422_B12_C24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4422_B12_C24, mRNA
           sequence
          Length = 551

 Score = 36.2 bits (18), Expect = 0.076
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 454 cggtgatggtagtcatgg 471
           ||||||||||||||||||
Sbjct: 65  cggtgatggtagtcatgg 48



>gb|CN814705.1|CN814705 HRO4501_F02_K03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4501_F02_K03, mRNA sequence
          Length = 641

 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 315 agcagcttccacaatct 331
           |||||||||||||||||
Sbjct: 434 agcagcttccacaatct 450



>gb|CN815072.1|CN815072 HRO4505_E09_I17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
            sativa cDNA clone HRO4505_E09_I17, mRNA sequence
          Length = 451

 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 1192 tgagcctggcctgcgac 1208
            |||||||||||||||||
Sbjct: 65   tgagcctggcctgcgac 49



>gb|CN816762.1|CN816762 HRO4524_E03_J06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4524_E03_J06, mRNA sequence
          Length = 742

 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 206 gaaatcaatatctcaac 222
           |||||||||||||||||
Sbjct: 719 gaaatcaatatctcaac 735



>gb|CN820684.1|CN820684 HRO4416_C12_F24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4416_C12_F24, mRNA
           sequence
          Length = 437

 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 965 tcttgtacttggcgaag 981
           |||||||||||||||||
Sbjct: 32  tcttgtacttggcgaag 16



>gb|CN820717.1|CN820717 HRO4416_G05_N10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4416_G05_N10, mRNA
           sequence
          Length = 644

 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 965 tcttgtacttggcgaag 981
           |||||||||||||||||
Sbjct: 359 tcttgtacttggcgaag 375



>gb|CN821556.1|CN821556 HRO4426_F09_K18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
            leaf Avena sativa cDNA clone HRO4426_F09_K18, mRNA
            sequence
          Length = 451

 Score = 34.2 bits (17), Expect = 0.30
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 1156 cggcggcgaagatgccgagga 1176
            ||||||||| |||||||||||
Sbjct: 88   cggcggcgacgatgccgagga 68



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3526
Number of Sequences: 8143
Number of extensions: 3526
Number of successful extensions: 1028
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1020
Number of HSP's gapped (non-prelim): 8
length of query: 1312
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1296
effective length of database: 4,572,175
effective search space: 5925538800
effective search space used: 5925538800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)