BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448569.2.1
(758 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816002.1|CN816002 HRO4515_G10_N19ZS5 Lib AA071E1X Aven... 42 7e-004
gb|CN816235.1|CN816235 HRO4518_D11_G22ZS5 Lib AA071E1X Aven... 34 0.17
gb|CN821008.1|CN821008 HRO4422_E04_I08ZS5 Lib AA069E1X Aven... 34 0.17
>gb|CN816002.1|CN816002 HRO4515_G10_N19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_G10_N19, mRNA sequence
Length = 609
Score = 42.1 bits (21), Expect = 7e-004
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 329 tcagtggcgggcgcactcggcggggagtccttgcgggaacc 369
||||| ||||| |||||||||||||| || ||||||||||
Sbjct: 534 tcagttgcgggagcactcggcggggaagccctgcgggaacc 494
>gb|CN816235.1|CN816235 HRO4518_D11_G22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_D11_G22, mRNA sequence
Length = 710
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 723 atggtgtaggtgtgtgtgtgg 743
|||||||| ||||||||||||
Sbjct: 159 atggtgtatgtgtgtgtgtgg 139
>gb|CN821008.1|CN821008 HRO4422_E04_I08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_E04_I08, mRNA
sequence
Length = 430
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 723 atggtgtaggtgtgtgtgtgg 743
|||||||| ||||||||||||
Sbjct: 215 atggtgtatgtgtgtgtgtgg 235
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1546
Number of Sequences: 8143
Number of extensions: 1546
Number of successful extensions: 389
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 4
length of query: 758
length of database: 4,702,463
effective HSP length: 16
effective length of query: 742
effective length of database: 4,572,175
effective search space: 3392553850
effective search space used: 3392553850
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)