BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448339.2.1
(931 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821194.1|CN821194 HRO4428_E09_J18ZS5 Lib AA069E1X Aven... 347 1e-095
gb|CN816965.1|CN816965 HRO4526_G07_M14ZS5 Lib AA071E1X Aven... 333 2e-091
gb|CN814992.1|CN814992 HRO4504_F10_L20ZS5 Lib AA071E1X Aven... 303 1e-082
gb|CN815364.1|CN815364 HRO4508_H03_P06ZS5 Lib AA071E1X Aven... 228 7e-060
gb|CN819537.1|CN819537 HRO4401_C11_E21ZS5 Lib AA069E1X Aven... 159 5e-039
gb|CN821493.1|CN821493 HRO4425_H11_O21ZS5 Lib AA069E1X Aven... 157 2e-038
gb|CN821289.1|CN821289 HRO4423_F05_L09ZS5 Lib AA069E1X Aven... 135 8e-032
gb|CN820019.1|CN820019 HRO4410_B08_C16ZS5 Lib AA069E1X Aven... 127 2e-029
gb|CN820188.1|CN820188 HRO4412_B09_D18ZS5 Lib AA069E1X Aven... 127 2e-029
gb|CN817480.1|CN817480 HRO4466_C01_F02ZS5 Lib AA070E1X Aven... 107 2e-023
gb|CN816098.1|CN816098 HRO4517_A02_A03ZS5 Lib AA071E1X Aven... 105 7e-023
gb|CN814697.1|CN814697 HRO4501_E06_I11ZS5 Lib AA071E1X Aven... 96 7e-020
gb|CN820524.1|CN820524 HRO4413_D03_G05ZS5 Lib AA069E1X Aven... 72 1e-012
gb|CN814688.1|CN814688 HRO4501_D09_G17ZS5 Lib AA071E1X Aven... 60 4e-009
gb|CN814731.1|CN814731 HRO4501_H05_O09ZS5 Lib AA071E1X Aven... 60 4e-009
gb|CN814650.1|CN814650 HRO4501_A06_A11ZS5 Lib AA071E1X Aven... 40 0.003
gb|CN814766.1|CN814766 HRO4502_C05_E10ZS5 Lib AA071E1X Aven... 38 0.014
>gb|CN821194.1|CN821194 HRO4428_E09_J18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_E09_J18, mRNA
sequence
Length = 592
Score = 347 bits (175), Expect = 1e-095
Identities = 271/303 (89%)
Strand = Plus / Plus
Query: 285 tattcttggtgaacattcacttcccaccggattaccctttcaagccaccaaaggtgtctt 344
||||||||||||||||||| || ||||| ||||| |||||||||||||| ||||| ||||
Sbjct: 30 tattcttggtgaacattcattttccaccagattatcctttcaagccaccgaaggtctctt 89
Query: 345 tccgcaccaaggttttccacccgaacatcaacagcaacggcagcatttgccttgacattc 404
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 tccgcaccaaggtcttccacccgaacatcaacagcaacggcagcatttgccttgacattc 149
Query: 405 ttaaggaacagtggagccctgctttaactatctcaaaggttctcctgtcaatctgctcac 464
| ||||| ||||||||||| ||| | || || |||||||| |||||||||||||||||
Sbjct: 150 tcaaggagcagtggagcccggctctgaccatatcaaaggtcctcctgtcaatctgctcgt 209
Query: 465 tgctcacggacccaaaccctgatgatcctcttgtccctgagattgctcacatgtacaaga 524
|||| |||||||| ||||||||||| || || || |||||||| || |||||||||||||
Sbjct: 210 tgctgacggacccgaaccctgatgacccgctggtgcctgagatcgcccacatgtacaaga 269
Query: 525 ccgacagggccaagtatgagtccaccgcacgctcctggacacagaagtatgccatgggct 584
| || ||||||||||| |||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 270 ctgatagggccaagtacgagtccactgctcgctcctggacgcagaagtacgccatgggct 329
Query: 585 aga 587
|||
Sbjct: 330 aga 332
Score = 42.1 bits (21), Expect = 9e-004
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 671 tgaatggacttttgaggaccattgtgccc 699
||||||||||||||||| |||||||||||
Sbjct: 442 tgaatggacttttgagg-ccattgtgccc 469
Score = 38.2 bits (19), Expect = 0.014
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 636 cgttatcacctaaataacc 654
|||||||||||||||||||
Sbjct: 392 cgttatcacctaaataacc 410
>gb|CN816965.1|CN816965 HRO4526_G07_M14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_G07_M14, mRNA sequence
Length = 532
Score = 333 bits (168), Expect = 2e-091
Identities = 252/280 (90%)
Strand = Plus / Plus
Query: 308 ccaccggattaccctttcaagccaccaaaggtgtctttccgcaccaaggttttccacccg 367
||||| ||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 13 ccaccagattatcctttcaagccaccgaaggtctctttccgcaccaaggtcttccacccg 72
Query: 368 aacatcaacagcaacggcagcatttgccttgacattcttaaggaacagtggagccctgct 427
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct: 73 aacatcaacagcaacggcagcatttgccttgacattctcaaggagcagtggagcccggct 132
Query: 428 ttaactatctcaaaggttctcctgtcaatctgctcactgctcacggacccaaaccctgat 487
| || || |||||||| ||||||||||||||||| |||| |||||||| |||||||||
Sbjct: 133 ctgaccatatcaaaggtcctcctgtcaatctgctcgttgctgacggacccgaaccctgat 192
Query: 488 gatcctcttgtccctgagattgctcacatgtacaagaccgacagggccaagtatgagtcc 547
|| ||||| || |||||||| || |||||||||||||| || ||||||||||| ||||||
Sbjct: 193 gaccctctggtgcctgagatcgcccacatgtacaagactgatagggccaagtacgagtcc 252
Query: 548 accgcacgctcctggacacagaagtatgccatgggctaga 587
|| || ||||||||||| ||||||||||||||||||||||
Sbjct: 253 actgctcgctcctggacgcagaagtatgccatgggctaga 292
Score = 46.1 bits (23), Expect = 6e-005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 632 aaatcgttatcacctaaataacc 654
|||||||||||||||||||||||
Sbjct: 345 aaatcgttatcacctaaataacc 367
Score = 44.1 bits (22), Expect = 2e-004
Identities = 38/41 (92%), Gaps = 3/41 (7%)
Strand = Plus / Plus
Query: 671 tgaatggacttttgaggaccattgtgccc--tgttgaactc 709
||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 397 tgaatggacttttgagg-ccattgtgccccttgttgaactc 436
>gb|CN814992.1|CN814992 HRO4504_F10_L20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_F10_L20, mRNA sequence
Length = 508
Score = 303 bits (153), Expect = 1e-082
Identities = 228/253 (90%)
Strand = Plus / Plus
Query: 335 aaggtgtctttccgcaccaaggttttccacccgaacatcaacagcaacggcagcatttgc 394
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2 aaggtctcgttccgcaccaaggtcttccacccgaacatcaacagcaacggcagcatttgc 61
Query: 395 cttgacattcttaaggaacagtggagccctgctttaactatctcaaaggttctcctgtca 454
||||||||||| ||||| ||||||||||| ||| | || || |||||||| |||||||||
Sbjct: 62 cttgacattctcaaggagcagtggagcccggctctgaccatatcaaaggtcctcctgtca 121
Query: 455 atctgctcactgctcacggacccaaaccctgatgatcctcttgtccctgagattgctcac 514
|||||||| |||| |||||||| ||||||||||| ||||| || |||||||| || |||
Sbjct: 122 atctgctcgttgctgacggacccgaaccctgatgaccctctggtgcctgagatcgcccac 181
Query: 515 atgtacaagaccgacagggccaagtatgagtccaccgcacgctcctggacacagaagtat 574
||||||||||| || |||||||||||||||||||| || ||||||||||| |||||||||
Sbjct: 182 atgtacaagactgatagggccaagtatgagtccactgctcgctcctggacgcagaagtat 241
Query: 575 gccatgggctaga 587
|||||||||||||
Sbjct: 242 gccatgggctaga 254
Score = 44.1 bits (22), Expect = 2e-004
Identities = 38/41 (92%), Gaps = 3/41 (7%)
Strand = Plus / Plus
Query: 671 tgaatggacttttgaggaccattgtgccc--tgttgaactc 709
||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 359 tgaatggacttttgagg-ccattgtgccccttgttgaactc 398
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 633 aatcgttatcacctaaataacc 654
||||||||||||||||||||||
Sbjct: 308 aatcgttatcacctaaataacc 329
>gb|CN815364.1|CN815364 HRO4508_H03_P06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_H03_P06, mRNA sequence
Length = 377
Score = 228 bits (115), Expect = 7e-060
Identities = 184/207 (88%)
Strand = Plus / Plus
Query: 381 acggcagcatttgccttgacattcttaaggaacagtggagccctgctttaactatctcaa 440
||||||||||||||||||||||||| |||| ||||||||||| ||| | || || ||||
Sbjct: 1 acggcagcatttgccttgacattctctaggagcagtggagcccggctctgaccatatcaa 60
Query: 441 aggttctcctgtcaatctgctcactgctcacggacccaaaccctgatgatcctcttgtcc 500
|||| ||||||||||||||||| |||| |||||||| ||||||||||| ||||| || |
Sbjct: 61 aggtcctcctgtcaatctgctcgttgctgacggacccgaaccctgatgaccctctggtgc 120
Query: 501 ctgagattgctcacatgtacaagaccgacagggccaagtatgagtccaccgcacgctcct 560
||||||| || |||||||||||||| || |||||||||||||||||||| || |||||||
Sbjct: 121 ctgagatcgcccacatgtacaagactgatagggccaagtatgagtccactgctcgctcct 180
Query: 561 ggacacagaagtatgccatgggctaga 587
|||| ||||||||||||||||||||||
Sbjct: 181 ggacgcagaagtatgccatgggctaga 207
Score = 44.1 bits (22), Expect = 2e-004
Identities = 38/41 (92%), Gaps = 3/41 (7%)
Strand = Plus / Plus
Query: 671 tgaatggacttttgaggaccattgtgccc--tgttgaactc 709
||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 312 tgaatggacttttgagg-ccattgtgccccttgttgaactc 351
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 633 aatcgttatcacctaaataacc 654
||||||||||||||||||||||
Sbjct: 261 aatcgttatcacctaaataacc 282
>gb|CN819537.1|CN819537 HRO4401_C11_E21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_C11_E21, mRNA
sequence
Length = 657
Score = 159 bits (80), Expect = 5e-039
Identities = 242/296 (81%)
Strand = Plus / Plus
Query: 287 ttcttggtgaacattcacttcccaccggattaccctttcaagccaccaaaggtgtctttc 346
||||| ||||||||||| || || ||||||||||| ||||| || || ||||| ||||||
Sbjct: 69 ttcttagtgaacattcattttcctccggattaccccttcaaacccccgaaggtatctttc 128
Query: 347 cgcaccaaggttttccacccgaacatcaacagcaacggcagcatttgccttgacattctt 406
|| ||||| ||||| || || ||||||||||| || ||||| |||||||| ||||||
Sbjct: 129 aagacaaaggtcttccatcctaatatcaacagcaatggaagcatatgccttgatattctt 188
Query: 407 aaggaacagtggagccctgctttaactatctcaaaggttctcctgtcaatctgctcactg 466
||||| ||||||||||||||||| || ||||| ||||| | || || ||||| || |||
Sbjct: 189 aaggagcagtggagccctgctttgacgatctccaaggtattgctctctatctgttccctg 248
Query: 467 ctcacggacccaaaccctgatgatcctcttgtccctgagattgctcacatgtacaagacc 526
|| || || || ||||| || || || ||||||||||||||||| ||||||||||||||
Sbjct: 249 ctgaccgatcccaacccggacgacccccttgtccctgagattgcccacatgtacaagacg 308
Query: 527 gacagggccaagtatgagtccaccgcacgctcctggacacagaagtatgccatggg 582
||| || | ||||| ||| | || || ||| |||||| |||||||| ||||||||
Sbjct: 309 gaccggtcaaagtacgagacaacagcccgcagctggacgcagaagtacgccatggg 364
>gb|CN821493.1|CN821493 HRO4425_H11_O21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_H11_O21, mRNA
sequence
Length = 443
Score = 157 bits (79), Expect = 2e-038
Identities = 133/151 (88%)
Strand = Plus / Plus
Query: 437 tcaaaggttctcctgtcaatctgctcactgctcacggacccaaaccctgatgatcctctt 496
|||||||| ||||||||||||||||| |||| |||||||| ||||||||||| || ||
Sbjct: 25 tcaaaggtcctcctgtcaatctgctcgttgctgacggacccgaaccctgatgacccgctg 84
Query: 497 gtccctgagattgctcacatgtacaagaccgacagggccaagtatgagtccaccgcacgc 556
|| |||||||| || |||||||||||||| || ||||||||||| |||||||| || |||
Sbjct: 85 gtgcctgagatcgcccacatgtacaagactgatagggccaagtacgagtccactgctcgc 144
Query: 557 tcctggacacagaagtatgccatgggctaga 587
|||||||| |||||||| |||||||||||||
Sbjct: 145 tcctggacgcagaagtacgccatgggctaga 175
Score = 42.1 bits (21), Expect = 9e-004
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 671 tgaatggacttttgaggaccattgtgccc 699
||||||||||||||||| |||||||||||
Sbjct: 285 tgaatggacttttgagg-ccattgtgccc 312
Score = 38.2 bits (19), Expect = 0.014
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 636 cgttatcacctaaataacc 654
|||||||||||||||||||
Sbjct: 235 cgttatcacctaaataacc 253
>gb|CN821289.1|CN821289 HRO4423_F05_L09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_F05_L09, mRNA
sequence
Length = 648
Score = 135 bits (68), Expect = 8e-032
Identities = 290/364 (79%)
Strand = Plus / Minus
Query: 159 tgaaggagttgaaggacctgcagaaggacccgcccacctcctgcagcgcaggtcctgttg 218
|||||||| | ||||| ||||||| ||| ||||| |||||||||||||| || ||||| |
Sbjct: 646 tgaaggagctcaaggatctgcagagggatccgccgacctcctgcagcgcggggcctgtcg 587
Query: 219 gtgaggacatgttccattggcaagcgaccatcatggggccttcggacagcccatttgcag 278
||| || ||||| || ||||| || || || ||||| || || |||||||| | |
Sbjct: 586 ctgaagatatgtttcactggcaggcaacgattatgggtccgtcagacagcccttacagtg 527
Query: 279 gtggggtattcttggtgaacattcacttcccaccggattaccctttcaagccaccaaagg 338
| || || |||||||| | ||||| || || ||||| ||||| ||||| ||||| ||||
Sbjct: 526 gaggtgtcttcttggttacaattcattttcctccggactacccgttcaaaccacctaagg 467
Query: 339 tgtctttccgcaccaaggttttccacccgaacatcaacagcaacggcagcatttgccttg 398
| ||||| || ||||| ||||| || ||| | |||||||| |||||||| |||||||
Sbjct: 466 tcgctttcaaaacaaaggtgttccatccaaacgttaacagcaatggcagcatctgccttg 407
Query: 399 acattcttaaggaacagtggagccctgctttaactatctcaaaggttctcctgtcaatct 458
| || | ||||| |||||||| ||||| | || ||||||||||| ||||| |||||||
Sbjct: 406 atatcttgaaggagcagtggagtcctgcactgacaatctcaaaggtgctcctctcaatct 347
Query: 459 gctcactgctcacggacccaaaccctgatgatcctcttgtccctgagattgctcacatgt 518
|||| || || |||||||||||||| || ||||| || || || ||||||||||||||||
Sbjct: 346 gctccctactgacggacccaaaccccgacgatccactggttccggagattgctcacatgt 287
Query: 519 acaa 522
||||
Sbjct: 286 acaa 283
>gb|CN820019.1|CN820019 HRO4410_B08_C16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_B08_C16, mRNA
sequence
Length = 560
Score = 127 bits (64), Expect = 2e-029
Identities = 176/212 (83%), Gaps = 1/212 (0%)
Strand = Plus / Plus
Query: 314 gattaccctttcaagccaccaaaggtgtctttccgcaccaaggttttccacccgaacatc 373
||||| |||||||| ||||||||||| | ||||| || ||||| |||||||| ||||||
Sbjct: 18 gattatcctttcaa-ccaccaaaggtagcgttccgtacgaaggtgttccacccaaacatc 76
Query: 374 aacagcaacggcagcatttgccttgacattcttaaggaacagtggagccctgctttaact 433
||||||||||| ||||||||||| ||||| || ||||| || ||||| || ||| ||||
Sbjct: 77 aacagcaacgggagcatttgcctggacatcctgaaggaccaatggagtcccgctctaacc 136
Query: 434 atctcaaaggttctcctgtcaatctgctcactgctcacggacccaaaccctgatgatcct 493
||||| ||||| | ||||| |||||||| ||||| || ||||| ||||| || || |||
Sbjct: 137 atctccaaggtgttgctgtccatctgctccctgctgacagacccgaaccccgacgaccct 196
Query: 494 cttgtccctgagattgctcacatgtacaagac 525
|| || || ||||| || ||||||||||||||
Sbjct: 197 ctggttcccgagatcgcccacatgtacaagac 228
>gb|CN820188.1|CN820188 HRO4412_B09_D18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_B09_D18, mRNA
sequence
Length = 540
Score = 127 bits (64), Expect = 2e-029
Identities = 176/212 (83%), Gaps = 1/212 (0%)
Strand = Plus / Plus
Query: 314 gattaccctttcaagccaccaaaggtgtctttccgcaccaaggttttccacccgaacatc 373
||||| |||||||| ||||||||||| | ||||| || ||||| |||||||| ||||||
Sbjct: 14 gattatcctttcaa-ccaccaaaggtagcgttccgtacgaaggtgttccacccaaacatc 72
Query: 374 aacagcaacggcagcatttgccttgacattcttaaggaacagtggagccctgctttaact 433
||||||||||| ||||||||||| ||||| || ||||| || ||||| || ||| ||||
Sbjct: 73 aacagcaacgggagcatttgcctggacatcctgaaggaccaatggagtcccgctctaacc 132
Query: 434 atctcaaaggttctcctgtcaatctgctcactgctcacggacccaaaccctgatgatcct 493
||||| ||||| | ||||| |||||||| ||||| || ||||| ||||| || || |||
Sbjct: 133 atctccaaggtgttgctgtccatctgctccctgctgacagacccgaaccccgacgaccct 192
Query: 494 cttgtccctgagattgctcacatgtacaagac 525
|| || || ||||| || ||||||||||||||
Sbjct: 193 ctggttcccgagatcgcccacatgtacaagac 224
>gb|CN817480.1|CN817480 HRO4466_C01_F02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_C01_F02, mRNA sequence
Length = 510
Score = 107 bits (54), Expect = 2e-023
Identities = 156/190 (82%)
Strand = Plus / Plus
Query: 393 gccttgacattcttaaggaacagtggagccctgctttaactatctcaaaggttctcctgt 452
||||||| ||||||||||| ||||||||||||||||| || ||||| ||||| | || |
Sbjct: 12 gccttgatattcttaaggagcagtggagccctgctttgacgatctccaaggtattgctct 71
Query: 453 caatctgctcactgctcacggacccaaaccctgatgatcctcttgtccctgagattgctc 512
| ||||| || ||||| || || || ||||| || || || ||||||||||||||||| |
Sbjct: 72 ctatctgttccctgctgaccgatcccaacccggacgacccccttgtccctgagattgccc 131
Query: 513 acatgtacaagaccgacagggccaagtatgagtccaccgcacgctcctggacacagaagt 572
||||||||||||| ||| || | ||||| ||| | || || ||| |||||| |||||||
Sbjct: 132 acatgtacaagacggaccggtcaaagtacgagacaacagcccgcagctggacgcagaagt 191
Query: 573 atgccatggg 582
| ||||||||
Sbjct: 192 acgccatggg 201
>gb|CN816098.1|CN816098 HRO4517_A02_A03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_A02_A03, mRNA sequence
Length = 641
Score = 105 bits (53), Expect = 7e-023
Identities = 143/173 (82%)
Strand = Plus / Plus
Query: 350 accaaggttttccacccgaacatcaacagcaacggcagcatttgccttgacattcttaag 409
|||||||| ||||| || ||| | ||||||||||||||||| |||||||| || | |||
Sbjct: 431 accaaggtgttccatccaaacgttaacagcaacggcagcatctgccttgatatcttgaag 490
Query: 410 gaacagtggagccctgctttaactatctcaaaggttctcctgtcaatctgctcactgctc 469
|| |||||||| ||||| | || || || ||||| ||||| ||||||||||| | ||
Sbjct: 491 gagcagtggagtcctgcactgacaatttcgaaggtgctcctctcaatctgctccttactg 550
Query: 470 acggacccaaaccctgatgatcctcttgtccctgagattgctcacatgtacaa 522
|||||||||||||| || ||||| || || || ||||||||||||||||||||
Sbjct: 551 acggacccaaaccccgacgatccactggttccggagattgctcacatgtacaa 603
>gb|CN814697.1|CN814697 HRO4501_E06_I11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_E06_I11, mRNA sequence
Length = 409
Score = 95.6 bits (48), Expect = 7e-020
Identities = 139/168 (82%), Gaps = 1/168 (0%)
Strand = Plus / Plus
Query: 415 gtggagccctgctttaactatctcaaaggttctcctgtcaatctgctcactgctcacgga 474
||||||||||||||| || ||||| |||||| | || ||||||||||| ||||| || ||
Sbjct: 10 gtggagccctgctttgac-atctctaaggttttgctttcaatctgctcgctgcttaccga 68
Query: 475 cccaaaccctgatgatcctcttgtccctgagattgctcacatgtacaagaccgacagggc 534
||| ||||| || || ||||||||||||||||| || || ||||||||||| || || |
Sbjct: 69 ccccaacccggacgaccctcttgtccctgagatcgcccatatgtacaagacggatcggtc 128
Query: 535 caagtatgagtccaccgcacgctcctggacacagaagtatgccatggg 582
||||| ||| | || || ||| |||||| |||||||||||||||||
Sbjct: 129 gaagtacgagacgacagcccgcagctggacgcagaagtatgccatggg 176
>gb|CN820524.1|CN820524 HRO4413_D03_G05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_D03_G05, mRNA
sequence
Length = 393
Score = 71.9 bits (36), Expect = 1e-012
Identities = 105/128 (82%)
Strand = Plus / Plus
Query: 455 atctgctcactgctcacggacccaaaccctgatgatcctcttgtccctgagattgctcac 514
|||||||| ||||| || ||||| ||||| || || ||||||||||||||||| || ||
Sbjct: 16 atctgctcgctgcttaccgaccccaacccggacgaccctcttgtccctgagatcgcccat 75
Query: 515 atgtacaagaccgacagggccaagtatgagtccaccgcacgctcctggacacagaagtat 574
||||||||||| || || | ||||| ||| | || || ||| |||||| |||||||||
Sbjct: 76 atgtacaagacggatcggtcaaagtacgagacgacagcccgcagctggacgcagaagtat 135
Query: 575 gccatggg 582
||||||||
Sbjct: 136 gccatggg 143
>gb|CN814688.1|CN814688 HRO4501_D09_G17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_D09_G17, mRNA sequence
Length = 564
Score = 60.0 bits (30), Expect = 4e-009
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 362 cacccgaacatcaacagcaacggcagcatttgccttgacattcttaaggaacagtggagc 421
||||| ||||||||| |||||||||||| ||||| ||||| || ||||| |||||||||
Sbjct: 33 cacccaaacatcaactccaacggcagcatctgcctggacatcctcaaggagcagtggagc 92
Query: 422 cc 423
||
Sbjct: 93 cc 94
>gb|CN814731.1|CN814731 HRO4501_H05_O09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_H05_O09, mRNA sequence
Length = 624
Score = 60.0 bits (30), Expect = 4e-009
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 362 cacccgaacatcaacagcaacggcagcatttgccttgacattcttaaggaacagtggagc 421
||||| ||||||||| |||||||||||| ||||| ||||| || ||||| |||||||||
Sbjct: 110 cacccaaacatcaactccaacggcagcatctgcctggacatcctcaaggagcagtggagc 169
Query: 422 cc 423
||
Sbjct: 170 cc 171
>gb|CN814650.1|CN814650 HRO4501_A06_A11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_A06_A11, mRNA sequence
Length = 245
Score = 40.1 bits (20), Expect = 0.003
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 559 ctggacacagaagtatgccatggg 582
|||||| |||||||||||||||||
Sbjct: 88 ctggacgcagaagtatgccatggg 111
Score = 38.2 bits (19), Expect = 0.014
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 473 gacccaaaccctgatgatcctcttgtccctgagat 507
||||| ||||| || || |||||||||||||||||
Sbjct: 2 gaccccaacccggacgaccctcttgtccctgagat 36
>gb|CN814766.1|CN814766 HRO4502_C05_E10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_C05_E10, mRNA sequence
Length = 722
Score = 38.2 bits (19), Expect = 0.014
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 371 atcaacagcaacggcagca 389
|||||||||||||||||||
Sbjct: 522 atcaacagcaacggcagca 504
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2474
Number of Sequences: 8143
Number of extensions: 2474
Number of successful extensions: 719
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 36
length of query: 931
length of database: 4,702,463
effective HSP length: 16
effective length of query: 915
effective length of database: 4,572,175
effective search space: 4183540125
effective search space used: 4183540125
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)