BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441542.2.1
(3782 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Aven... 194 4e-049
gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Aven... 182 2e-045
gb|BE439369.1|BE439369 CDO1430_WHE05G09R ITEC CDO Oat cDNA ... 176 9e-044
gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Aven... 101 4e-021
gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Aven... 80 2e-014
gb|CN819706.1|CN819706 HRO4403_B11_D21ZS5 Lib AA069E1X Aven... 64 1e-009
gb|CN815744.1|CN815744 HRO4510_A08_A16ZS5 Lib AA071E1X Aven... 40 0.014
>gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C09_F17, mRNA
sequence
Length = 676
Score = 194 bits (98), Expect = 4e-049
Identities = 263/318 (82%)
Strand = Plus / Minus
Query: 305 cctagcagttgatgccacacgttcgagtatccgggccagtgacgcgggtggtgaacggat 364
||||||||||||| ||||| ||| | | | |||||||| || ||||| ||||| ||||
Sbjct: 328 cctagcagttgatcccacaggtttggatgttcgggccagcaacccgggtagtgaatggat 269
Query: 365 cgatgcgaacccacagcaaggagaagatcgacgccagcaggatcgcccagacaaccacga 424
| || |||||||||||||||||||||||||| || || ||||| |||||||| | || |
Sbjct: 268 caatacgaacccacagcaaggagaagatcgaagcgaggaggatagcccagacgatgacaa 209
Query: 425 tggtcggggtgcggttctgccgacccatgagacccttgaggaacgggtacaggtgaacga 484
| ||||| |||||||| || ||||| |||||||||||||| ||||| | |||||| |
Sbjct: 208 tcgtcggtgtgcggtttgtcctgcccataagacccttgaggaatgggtataagtgaacaa 149
Query: 485 tcacccagaaggcgaagaagagcttgccgaagagcggaccccacgactggtacccgctgt 544
||||||||||||| ||||||||||| ||||| ||||| ||||| || ||||| || ||||
Sbjct: 148 tcacccagaaggcaaagaagagctttccgaacagcggcccccatgattggtaaccactgt 89
Query: 545 tgatggcgtaggagatgccggcaacaacgccgaccaggttgatgatcaggatggtggtgg 604
||||||| |||||| |||| |||||||| ||||||| ||| ||||||| || || || |
Sbjct: 88 tgatggcataggaggtgccagcaacaacaccgaccatgttaatgatcaaaattgttgttg 29
Query: 605 gcgggatcagaagtgtcg 622
| ||||| ||||||||||
Sbjct: 28 gagggatgagaagtgtcg 11
>gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_H12_O23, mRNA
sequence
Length = 620
Score = 182 bits (92), Expect = 2e-045
Identities = 197/232 (84%)
Strand = Plus / Minus
Query: 305 cctagcagttgatgccacacgttcgagtatccgggccagtgacgcgggtggtgaacggat 364
||||||||||||| ||||| ||| | | | |||||||| ||| ||||| ||||| ||||
Sbjct: 239 cctagcagttgatcccacaggtttggatgttcgggccagcgacccgggtagtgaatggat 180
Query: 365 cgatgcgaacccacagcaaggagaagatcgacgccagcaggatcgcccagacaaccacga 424
|||| |||||||||||||||||||||||||| || || ||||| |||||||| | ||||
Sbjct: 179 cgatacgaacccacagcaaggagaagatcgaagcgaggaggatagcccagacgatgacga 120
Query: 425 tggtcggggtgcggttctgccgacccatgagacccttgaggaacgggtacaggtgaacga 484
| ||||| |||||||| || ||||| |||||||||||||||||||| | |||||| |
Sbjct: 119 tcgtcggtgtgcggtttgtcctgcccataagacccttgaggaacgggtataagtgaacaa 60
Query: 485 tcacccagaaggcgaagaagagcttgccgaagagcggaccccacgactggta 536
||||||||||||| ||||||||||| ||||||||||| ||||| || |||||
Sbjct: 59 tcacccagaaggcaaagaagagctttccgaagagcggcccccatgattggta 8
>gb|BE439369.1|BE439369 CDO1430_WHE05G09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1430_WHE05G09, mRNA sequence
Length = 177
Score = 176 bits (89), Expect = 9e-044
Identities = 135/149 (90%), Gaps = 1/149 (0%)
Strand = Plus / Minus
Query: 1540 ttgcttcccttcttcctgccaccacatagtgatgacaagaaaccacccttcttttgctta 1599
|||||| |||||||| |||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct: 151 ttgcttgccttcttcttgcccccacacagtgatgacaagaaaccacccttctttggctta 92
Query: 1600 attgggggctcataaccatatagagctgttctgttgaaaacac-agccagtgcccacata 1658
|||||||| ||||||||||| | |||||||||||||||||||| | ||||| ||||||||
Sbjct: 91 attgggggttcataaccatagatagctgttctgttgaaaacacaatccagttcccacata 32
Query: 1659 aactggtccttggatgccatcaagacctc 1687
|||||| ||||| ||||||||||| ||||
Sbjct: 31 aactggcccttgaatgccatcaaggcctc 3
>gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_G06_M12, mRNA sequence
Length = 521
Score = 101 bits (51), Expect = 4e-021
Identities = 168/207 (81%)
Strand = Plus / Minus
Query: 384 ggagaagatcgacgccagcaggatcgcccagacaaccacgatggtcggggtgcggttctg 443
||||||||| || || ||||||| | ||||| || |||||||| || |||||||| ||
Sbjct: 256 ggagaagatggaggcgagcaggacagaccagagcacgacgatggtgggcgtgcggttttg 197
Query: 444 ccgacccatgagacccttgaggaacgggtacaggtgaacgatcacccagaaggcgaagaa 503
|| |||||||| ||||||||||| ||||| ||||| ||||| |||||||||| |||||
Sbjct: 196 cctccccatgagccccttgaggaatgggtagaggtggacgatgacccagaaggaaaagaa 137
Query: 504 gagcttgccgaagagcggaccccacgactggtacccgctgttgatggcgtaggagatgcc 563
|||||| |||||||| || ||||| ||| ||| || |||||| |||| ||| | ||
Sbjct: 136 gagcttcccgaagagggggccccatgacccgtagccattgttgactgcgtcggaaacacc 77
Query: 564 ggcaacaacgccgaccaggttgatgat 590
||||||| |||||||| |||||||||
Sbjct: 76 agcaacaatgccgaccatgttgatgat 50
>gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_C10_F19, mRNA sequence
Length = 515
Score = 79.8 bits (40), Expect = 2e-014
Identities = 94/112 (83%)
Strand = Plus / Minus
Query: 305 cctagcagttgatgccacacgttcgagtatccgggccagtgacgcgggtggtgaacggat 364
||||||||||||| ||||| ||| | | | |||||||| || ||||| ||||| ||||
Sbjct: 128 cctagcagttgatcccacaggtttggatgttcgggccagcaacccgggtagtgaatggat 69
Query: 365 cgatgcgaacccacagcaaggagaagatcgacgccagcaggatcgcccagac 416
| || |||||||||||||||||||||||||| || || ||||| ||||||||
Sbjct: 68 caatacgaacccacagcaaggagaagatcgaagcgaggaggatagcccagac 17
>gb|CN819706.1|CN819706 HRO4403_B11_D21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_B11_D21, mRNA
sequence
Length = 452
Score = 63.9 bits (32), Expect = 1e-009
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 305 cctagcagttgatgccacacgttcgagtatccgggccagtgacgcgggtggtgaacggat 364
||||||||||||| ||||| ||| | | | |||||||| ||| ||||| ||||| ||||
Sbjct: 90 cctagcagttgatcccacaggtttggatgttcgggccagcgacccgggtagtgaatggat 31
Query: 365 cgatgcgaacccacagcaag 384
|||| |||||||||||||||
Sbjct: 30 cgatacgaacccacagcaag 11
>gb|CN815744.1|CN815744 HRO4510_A08_A16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_A08_A16, mRNA sequence
Length = 445
Score = 40.1 bits (20), Expect = 0.014
Identities = 62/76 (81%)
Strand = Plus / Minus
Query: 305 cctagcagttgatgccacacgttcgagtatccgggccagtgacgcgggtggtgaacggat 364
||||||||||||| ||||| ||| | | | |||||||| || ||||| ||||| ||||
Sbjct: 76 cctagcagttgatcccacaggtttggatgttcgggccagcaacccgggtagtgaatggat 17
Query: 365 cgatgcgaacccacag 380
| || |||||||||||
Sbjct: 16 caatacgaacccacag 1
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9747
Number of Sequences: 8143
Number of extensions: 9747
Number of successful extensions: 2814
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2799
Number of HSP's gapped (non-prelim): 8
length of query: 3782
length of database: 4,702,463
effective HSP length: 17
effective length of query: 3765
effective length of database: 4,564,032
effective search space: 17183580480
effective search space used: 17183580480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)