BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2441114.2.2
         (962 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815095.1|CN815095  HRO4505_G11_M21ZS5 Lib AA071E1X Aven...    70   4e-012
gb|CN814748.1|CN814748  HRO4502_A11_A22ZS5 Lib AA071E1X Aven...    34   0.22 
gb|CN817222.1|CN817222  HRO4464_D02_G04ZS5 Lib AA070E1X Aven...    34   0.22 
gb|CN817582.1|CN817582  HRO4463_E08_I15ZS5 Lib AA070E1X Aven...    34   0.22 
gb|CN817742.1|CN817742  HRO4459_A04_A07ZS5 Lib AA070E1X Aven...    34   0.22 
gb|CN817800.1|CN817800  HRO4461_A01_B01ZS5 Lib AA070E1X Aven...    34   0.22 
gb|CN817952.1|CN817952  HRO4453_C12_F23ZS5 Lib AA070E1X Aven...    34   0.22 
gb|CN818406.1|CN818406  HRO4469_B11_D21ZS5 Lib AA070E1X Aven...    34   0.22 
gb|CN818732.1|CN818732  HRO4457_E10_J19ZS5 Lib AA070E1X Aven...    34   0.22 
gb|CN819264.1|CN819264  HRO4452_A02_A04ZS5 Lib AA070E1X Aven...    34   0.22 
gb|CN819276.1|CN819276  HRO4452_B04_C08ZS5 Lib AA070E1X Aven...    34   0.22 
gb|CN819891.1|CN819891  HRO4407_D08_H15ZS5 Lib AA069E1X Aven...    34   0.22 
gb|CN820785.1|CN820785  HRO4414_G11_M22ZS5 Lib AA069E1X Aven...    34   0.22 
>gb|CN815095.1|CN815095 HRO4505_G11_M21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4505_G11_M21, mRNA sequence
          Length = 303

 Score = 69.9 bits (35), Expect = 4e-012
 Identities = 41/43 (95%)
 Strand = Plus / Minus

                                                      
Query: 236 ccttgagcttcttggcgatgcctgcgaagtacttcccctggtg 278
           |||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 108 ccttgagcttcttggcgacgccggcgaagtacttcccctggtg 66
>gb|CN814748.1|CN814748 HRO4502_A11_A22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4502_A11_A22, mRNA sequence
          Length = 684

 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 356 cgccctgaacctggtcc 372
           |||||||||||||||||
Sbjct: 78  cgccctgaacctggtcc 94
>gb|CN817222.1|CN817222 HRO4464_D02_G04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4464_D02_G04, mRNA sequence
          Length = 356

 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 27  ttacttgagcaaatcat 43
           |||||||||||||||||
Sbjct: 200 ttacttgagcaaatcat 184
>gb|CN817582.1|CN817582 HRO4463_E08_I15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4463_E08_I15, mRNA sequence
          Length = 424

 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 27  ttacttgagcaaatcat 43
           |||||||||||||||||
Sbjct: 280 ttacttgagcaaatcat 264
>gb|CN817742.1|CN817742 HRO4459_A04_A07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4459_A04_A07, mRNA sequence
          Length = 300

 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 27  ttacttgagcaaatcat 43
           |||||||||||||||||
Sbjct: 152 ttacttgagcaaatcat 136
>gb|CN817800.1|CN817800 HRO4461_A01_B01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4461_A01_B01, mRNA sequence
          Length = 433

 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 27  ttacttgagcaaatcat 43
           |||||||||||||||||
Sbjct: 313 ttacttgagcaaatcat 297
>gb|CN817952.1|CN817952 HRO4453_C12_F23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4453_C12_F23, mRNA sequence
          Length = 469

 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 27  ttacttgagcaaatcat 43
           |||||||||||||||||
Sbjct: 395 ttacttgagcaaatcat 379
>gb|CN818406.1|CN818406 HRO4469_B11_D21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4469_B11_D21, mRNA sequence
          Length = 796

 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 27  ttacttgagcaaatcat 43
           |||||||||||||||||
Sbjct: 690 ttacttgagcaaatcat 674
>gb|CN818732.1|CN818732 HRO4457_E10_J19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4457_E10_J19, mRNA sequence
          Length = 343

 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 27  ttacttgagcaaatcat 43
           |||||||||||||||||
Sbjct: 187 ttacttgagcaaatcat 171
>gb|CN819264.1|CN819264 HRO4452_A02_A04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
          leaf Avena sativa cDNA clone HRO4452_A02_A04, mRNA
          sequence
          Length = 214

 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                           
Query: 27 ttacttgagcaaatcat 43
          |||||||||||||||||
Sbjct: 96 ttacttgagcaaatcat 80
>gb|CN819276.1|CN819276 HRO4452_B04_C08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4452_B04_C08, mRNA sequence
          Length = 361

 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 27  ttacttgagcaaatcat 43
           |||||||||||||||||
Sbjct: 186 ttacttgagcaaatcat 170
>gb|CN819891.1|CN819891 HRO4407_D08_H15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4407_D08_H15, mRNA
           sequence
          Length = 247

 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 27  ttacttgagcaaatcat 43
           |||||||||||||||||
Sbjct: 147 ttacttgagcaaatcat 131
>gb|CN820785.1|CN820785 HRO4414_G11_M22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4414_G11_M22, mRNA
           sequence
          Length = 595

 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 27  ttacttgagcaaatcat 43
           |||||||||||||||||
Sbjct: 555 ttacttgagcaaatcat 539
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2180
Number of Sequences: 8143
Number of extensions: 2180
Number of successful extensions: 599
Number of sequences better than  0.5: 13
Number of HSP's better than  0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 16
length of query: 962
length of database: 4,702,463
effective HSP length: 16
effective length of query: 946
effective length of database: 4,572,175
effective search space: 4325277550
effective search space used: 4325277550
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)