BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441114.2.2
(962 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815095.1|CN815095 HRO4505_G11_M21ZS5 Lib AA071E1X Aven... 70 4e-012
gb|CN814748.1|CN814748 HRO4502_A11_A22ZS5 Lib AA071E1X Aven... 34 0.22
gb|CN817222.1|CN817222 HRO4464_D02_G04ZS5 Lib AA070E1X Aven... 34 0.22
gb|CN817582.1|CN817582 HRO4463_E08_I15ZS5 Lib AA070E1X Aven... 34 0.22
gb|CN817742.1|CN817742 HRO4459_A04_A07ZS5 Lib AA070E1X Aven... 34 0.22
gb|CN817800.1|CN817800 HRO4461_A01_B01ZS5 Lib AA070E1X Aven... 34 0.22
gb|CN817952.1|CN817952 HRO4453_C12_F23ZS5 Lib AA070E1X Aven... 34 0.22
gb|CN818406.1|CN818406 HRO4469_B11_D21ZS5 Lib AA070E1X Aven... 34 0.22
gb|CN818732.1|CN818732 HRO4457_E10_J19ZS5 Lib AA070E1X Aven... 34 0.22
gb|CN819264.1|CN819264 HRO4452_A02_A04ZS5 Lib AA070E1X Aven... 34 0.22
gb|CN819276.1|CN819276 HRO4452_B04_C08ZS5 Lib AA070E1X Aven... 34 0.22
gb|CN819891.1|CN819891 HRO4407_D08_H15ZS5 Lib AA069E1X Aven... 34 0.22
gb|CN820785.1|CN820785 HRO4414_G11_M22ZS5 Lib AA069E1X Aven... 34 0.22
>gb|CN815095.1|CN815095 HRO4505_G11_M21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_G11_M21, mRNA sequence
Length = 303
Score = 69.9 bits (35), Expect = 4e-012
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 236 ccttgagcttcttggcgatgcctgcgaagtacttcccctggtg 278
|||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 108 ccttgagcttcttggcgacgccggcgaagtacttcccctggtg 66
>gb|CN814748.1|CN814748 HRO4502_A11_A22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_A11_A22, mRNA sequence
Length = 684
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 356 cgccctgaacctggtcc 372
|||||||||||||||||
Sbjct: 78 cgccctgaacctggtcc 94
>gb|CN817222.1|CN817222 HRO4464_D02_G04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_D02_G04, mRNA sequence
Length = 356
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 27 ttacttgagcaaatcat 43
|||||||||||||||||
Sbjct: 200 ttacttgagcaaatcat 184
>gb|CN817582.1|CN817582 HRO4463_E08_I15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_E08_I15, mRNA sequence
Length = 424
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 27 ttacttgagcaaatcat 43
|||||||||||||||||
Sbjct: 280 ttacttgagcaaatcat 264
>gb|CN817742.1|CN817742 HRO4459_A04_A07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_A04_A07, mRNA sequence
Length = 300
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 27 ttacttgagcaaatcat 43
|||||||||||||||||
Sbjct: 152 ttacttgagcaaatcat 136
>gb|CN817800.1|CN817800 HRO4461_A01_B01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_A01_B01, mRNA sequence
Length = 433
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 27 ttacttgagcaaatcat 43
|||||||||||||||||
Sbjct: 313 ttacttgagcaaatcat 297
>gb|CN817952.1|CN817952 HRO4453_C12_F23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_C12_F23, mRNA sequence
Length = 469
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 27 ttacttgagcaaatcat 43
|||||||||||||||||
Sbjct: 395 ttacttgagcaaatcat 379
>gb|CN818406.1|CN818406 HRO4469_B11_D21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_B11_D21, mRNA sequence
Length = 796
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 27 ttacttgagcaaatcat 43
|||||||||||||||||
Sbjct: 690 ttacttgagcaaatcat 674
>gb|CN818732.1|CN818732 HRO4457_E10_J19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_E10_J19, mRNA sequence
Length = 343
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 27 ttacttgagcaaatcat 43
|||||||||||||||||
Sbjct: 187 ttacttgagcaaatcat 171
>gb|CN819264.1|CN819264 HRO4452_A02_A04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4452_A02_A04, mRNA
sequence
Length = 214
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 27 ttacttgagcaaatcat 43
|||||||||||||||||
Sbjct: 96 ttacttgagcaaatcat 80
>gb|CN819276.1|CN819276 HRO4452_B04_C08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_B04_C08, mRNA sequence
Length = 361
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 27 ttacttgagcaaatcat 43
|||||||||||||||||
Sbjct: 186 ttacttgagcaaatcat 170
>gb|CN819891.1|CN819891 HRO4407_D08_H15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_D08_H15, mRNA
sequence
Length = 247
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 27 ttacttgagcaaatcat 43
|||||||||||||||||
Sbjct: 147 ttacttgagcaaatcat 131
>gb|CN820785.1|CN820785 HRO4414_G11_M22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_G11_M22, mRNA
sequence
Length = 595
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 27 ttacttgagcaaatcat 43
|||||||||||||||||
Sbjct: 555 ttacttgagcaaatcat 539
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2180
Number of Sequences: 8143
Number of extensions: 2180
Number of successful extensions: 599
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 16
length of query: 962
length of database: 4,702,463
effective HSP length: 16
effective length of query: 946
effective length of database: 4,572,175
effective search space: 4325277550
effective search space used: 4325277550
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)