BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441100.2.1
(646 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819880.1|CN819880 HRO4407_C04_F07ZS5 Lib AA069E1X Aven... 72 7e-013
gb|CN815764.1|CN815764 HRO4510_C04_E08ZS5 Lib AA071E1X Aven... 34 0.15
>gb|CN819880.1|CN819880 HRO4407_C04_F07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C04_F07, mRNA
sequence
Length = 741
Score = 71.9 bits (36), Expect = 7e-013
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 9 gtagaagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtaga 68
|||||||| |||||| ||| ||||||||| | |||||||||||||| ||| | || |||
Sbjct: 442 gtagaagcgtgcaaggcggcgacaggagctaccatcaaggtcgaataccttacccggaga 501
Query: 69 cccggagattatgccgaggtatacagcgatccgtcgaaaatccacatggaactcaactgg 128
|| ||||| ||||| || || |||||| | ||||| || |||| | || || ||||||
Sbjct: 502 ccaggagactatgctgaagtttacagcaacccgtccaagatccgcgacgagctgaactgg 561
Query: 129 acagcccagtacaccgatcttggccaaagcctcgcccaggcgtggaaatggcagaa 184
|||||||| ||| |||||| || |||||||||| ||| ||||||||||||||
Sbjct: 562 acagcccaacgcacggatcttcgcgaaagcctcgcgacggcatggaaatggcagaa 617
>gb|CN815764.1|CN815764 HRO4510_C04_E08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_C04_E08, mRNA sequence
Length = 665
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 209 agcctgattcagagttc 225
|||||||||||||||||
Sbjct: 96 agcctgattcagagttc 112
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1409
Number of Sequences: 8143
Number of extensions: 1409
Number of successful extensions: 395
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 3
length of query: 646
length of database: 4,702,463
effective HSP length: 16
effective length of query: 630
effective length of database: 4,572,175
effective search space: 2880470250
effective search space used: 2880470250
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)