BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441058.2.1
(1000 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820454.1|CN820454 HRO4419_E09_J17ZS5 Lib AA069E1X Aven... 470 e-132
>gb|CN820454.1|CN820454 HRO4419_E09_J17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_E09_J17, mRNA
sequence
Length = 739
Score = 470 bits (237), Expect = e-132
Identities = 399/453 (88%)
Strand = Plus / Plus
Query: 297 gtctttgagatgctctgggttatatctctctcagtttcgccatacctctcctcatctttt 356
||||||| ||| |||||| ||||||| || ||||| |||||||| ||||||||||||||
Sbjct: 5 gtctttgcgattctctggtctatatctttcccagttccgccatacatctcctcatctttt 64
Query: 357 agcctcaggagatggcaaaagaactgccactattgttggcgatgtctatatccatccatc 416
||| || ||||| ||||||| || |||||||||| | || ||||| ||||||||||||||
Sbjct: 65 agcttctggagacggcaaaaaaaatgccactattataggtgatgtgtatatccatccatc 124
Query: 417 tgccaaggtgcatcctacttcaaagattggcccaaatgtctctatatcagcaaatgcacg 476
||| ||||||||||| ||| ||||||| ||||| || ||||| ||||||||||||||||
Sbjct: 125 tgcaaaggtgcatccaactgcaaagatcggccccaacgtctcgttatcagcaaatgcacg 184
Query: 477 cgttggagctggtgccaggcttatcaattgcataattctggatgatgttgaaattatgga 536
| ||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 185 cattggagcaggtgccaggcttatcaattgtatcattctagatgatgttgaaattatgga 244
Query: 537 aaatgctgttgttatacattcaattgtagggtggaaatcatccattggaaaatggtcacg 596
||||| || |||||||||||||| || || ||||| ||| | || ||||||||||||||
Sbjct: 245 taatgcagtcgttatacattcaatagtgggttggaagtcaacaataggaaaatggtcacg 304
Query: 597 tgtacagggcgaaggtgatcacaatgccaaacttggcattactattcttggtgaagccgt 656
||||||||| |||||||| ||||||||||||||||| || || |||||||||||||||||
Sbjct: 305 tgtacagggtgaaggtgaccacaatgccaaacttggtatcaccattcttggtgaagccgt 364
Query: 657 tgatgttgaagatgaagtagttgtagttaacagcatcgtgctcccaaataaaactctcaa 716
||||||||||||||||||||| ||| ||| || || ||||||||||| |||||||||||
Sbjct: 365 tgatgttgaagatgaagtagtagtaactaatagtattgtgctcccaaacaaaactctcaa 424
Query: 717 tgtcagtgtccaagaggagatcatcctataata 749
||||||||| ||||| |||||||||||||||||
Sbjct: 425 tgtcagtgtgcaagaagagatcatcctataata 457
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2653
Number of Sequences: 8143
Number of extensions: 2653
Number of successful extensions: 792
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 1
length of query: 1000
length of database: 4,702,463
effective HSP length: 16
effective length of query: 984
effective length of database: 4,572,175
effective search space: 4499020200
effective search space used: 4499020200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)