BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2440773.2.1
         (1437 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN814888.1|CN814888  HRO4503_E12_J23ZS5 Lib AA071E1X Aven...   268   1e-071
gb|CN819077.1|CN819077  HRO4455_D09_G17ZS5 Lib AA070E1X Aven...    42   0.001
gb|AF033097.1|AF033097  Avena sativa nonphototropic hypocoty...    38   0.021
emb|Z48429.1|AFABF1  A.fatua mRNA for DNA-binding protein (c...    34   0.33 
emb|AJ251051.1|AFA251051  Avena fatua mRNA for VIP2 protein ...    34   0.33 

>gb|CN814888.1|CN814888 HRO4503_E12_J23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4503_E12_J23, mRNA sequence
          Length = 751

 Score =  268 bits (135), Expect = 1e-071
 Identities = 282/331 (85%)
 Strand = Plus / Plus

                                                                       
Query: 588 atctatttgactcattacaaggaacaagagttctgaactgtggacacacaatgcacttga 647
           |||||||||| |||||| |||| ||||||||||| | |||||||||||| |||||| || 
Sbjct: 11  atctatttgattcattaaaagggacaagagttcttacctgtggacacaccatgcacatgg 70

                                                                       
Query: 648 catgttttgaagaaatggtggcgcataacaaatacacttgtccaatatgctctaaaacag 707
             ||||||   || |||||||  ||||| |||||| |||||||||||||||| || || |
Sbjct: 71  actgtttttctgagatggtggaacataataaatactcttgtccaatatgctcgaagacgg 130

                                                                       
Query: 708 ctcttgatttgacacatcattgggaaatgttggatcaagagatcgaagccacgatcatgc 767
           |||||||  |||||||||| ||||  ||||||||||||||||| ||||| || || ||||
Sbjct: 131 ctcttgacatgacacatcactggggcatgttggatcaagagatagaagcaacaattatgc 190

                                                                       
Query: 768 ctcttgtgtatcgctacaagatttgggtgctttgcaacgattgcaacaaggtctcagagg 827
           ||| |||||| || |||||| ||||||| ||||||||||| |||||||| ||||| ||||
Sbjct: 191 ctcctgtgtaccgttacaaggtttgggttctttgcaacgactgcaacaaagtctcggagg 250

                                                                       
Query: 828 tgaactttcacgtgattggccacaagtgcagccactgcagatcgtacaacacccgaacaa 887
           || |||| ||||||||||||||||| |||||||||||||| || |||||||| ||| | |
Sbjct: 251 tggacttccacgtgattggccacaaatgcagccactgcagctcatacaacactcgatcga 310

                                          
Query: 888 catcgcgccctgcagatttatccggaagcag 918
           | ||||| |||||||||||||| ||||||||
Sbjct: 311 cctcgcggcctgcagatttatcaggaagcag 341



>gb|CN819077.1|CN819077 HRO4455_D09_G17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
          leaf Avena sativa cDNA clone HRO4455_D09_G17, mRNA
          sequence
          Length = 450

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 49 tccgccgtcgccgccgccgccgggg 73
          ||||||| |||||||||||||||||
Sbjct: 70 tccgccgccgccgccgccgccgggg 46



>gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocotyl 1 (NPH1-2) mRNA, complete cds
          Length = 3422

 Score = 38.2 bits (19), Expect = 0.021
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 52  gccgtcgccgccgccgccg 70
           |||||||||||||||||||
Sbjct: 382 gccgtcgccgccgccgccg 364



>emb|Z48429.1|AFABF1 A.fatua mRNA for DNA-binding protein (clone ABF1)
          Length = 1459

 Score = 34.2 bits (17), Expect = 0.33
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 54  cgtcgccgccgccgccg 70
           |||||||||||||||||
Sbjct: 411 cgtcgccgccgccgccg 395



>emb|AJ251051.1|AFA251051 Avena fatua mRNA for VIP2 protein (vip2 gene)
          Length = 1724

 Score = 34.2 bits (17), Expect = 0.33
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 54  cgtcgccgccgccgccgggga 74
           |||||||||||||| ||||||
Sbjct: 297 cgtcgccgccgccggcgggga 317



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3790
Number of Sequences: 8143
Number of extensions: 3790
Number of successful extensions: 1079
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1060
Number of HSP's gapped (non-prelim): 14
length of query: 1437
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1420
effective length of database: 4,564,032
effective search space: 6480925440
effective search space used: 6480925440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)