BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.1
(608 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818423.1|CN818423 HRO4453_C09_F17ZS5 Lib AA070E1X Aven... 248 5e-066
gb|CN820760.1|CN820760 HRO4414_D11_G22ZS5 Lib AA069E1X Aven... 248 5e-066
gb|CN815533.1|CN815533 HRO4512_F11_L22ZS5 Lib AA071E1X Aven... 34 0.14
>gb|CN818423.1|CN818423 HRO4453_C09_F17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_C09_F17, mRNA sequence
Length = 619
Score = 248 bits (125), Expect = 5e-066
Identities = 197/221 (89%)
Strand = Plus / Minus
Query: 292 ttaacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaac 351
|||| ||||||| || |||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 284 ttaagttgtctccgttttctccagtgtgttgtagttgagcaacttctcgataaggtcaac 225
Query: 352 atgggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatc 411
||||||||||||||| || | |||||||||||| | ||| ||| ||||||||||||||
Sbjct: 224 atgggtcatgagcatacgacggcagcagtagcgaaccaagcccaaggcatccagagcatc 165
Query: 412 cccttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcac 471
|||||||| ||| ||||||||||| || || |||||| ||||||||||||| || |||||
Sbjct: 164 cccttccgtgtaatcggcctggagaagatcaaggtagtggtcccacttgttaccgatcac 105
Query: 472 cttgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
|||||||||||||||||||||||| || |||||||||||||
Sbjct: 104 cttgccgcaggtgaagcagcgcacggggatgatcatcttcg 64
>gb|CN820760.1|CN820760 HRO4414_D11_G22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_D11_G22, mRNA
sequence
Length = 498
Score = 248 bits (125), Expect = 5e-066
Identities = 197/221 (89%)
Strand = Plus / Minus
Query: 292 ttaacttgtctcagtcttctccagtgtgttgtagttgagcaacttctcaatgaggtcaac 351
|||| ||||||| || |||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 262 ttaagttgtctccgttttctccagtgtgttgtagttgagcaacttctcgataaggtcaac 203
Query: 352 atgggtcatgagcattcgcctgcagcagtagcggaacaattccagagcatccagagcatc 411
||||||||||||||| || | |||||||||||| | ||| ||| ||||||||||||||
Sbjct: 202 atgggtcatgagcatacgacggcagcagtagcgaaccaagcccaaggcatccagagcatc 143
Query: 412 cccttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcac 471
|||||||| ||| ||||||||||| || || |||||| ||||||||||||| || |||||
Sbjct: 142 cccttccgtgtaatcggcctggagaagatcaaggtagtggtcccacttgttaccgatcac 83
Query: 472 cttgccgcaggtgaagcagcgcaccggtatgatcatcttcg 512
|||||||||||||||||||||||| || |||||||||||||
Sbjct: 82 cttgccgcaggtgaagcagcgcacggggatgatcatcttcg 42
>gb|CN815533.1|CN815533 HRO4512_F11_L22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4512_F11_L22, mRNA sequence
Length = 545
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 510 tcgccgccgccgccgca 526
|||||||||||||||||
Sbjct: 320 tcgccgccgccgccgca 336
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1919
Number of Sequences: 8143
Number of extensions: 1919
Number of successful extensions: 555
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 3
length of query: 608
length of database: 4,702,463
effective HSP length: 16
effective length of query: 592
effective length of database: 4,572,175
effective search space: 2706727600
effective search space used: 2706727600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)