BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437842.2.1
(1093 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817366.1|CN817366 HRO4465_D03_H05ZS5 Lib AA070E1X Aven... 176 3e-044
gb|CN816052.1|CN816052 HRO4516_D03_H06ZS5 Lib AA071E1X Aven... 105 8e-023
gb|CN815610.1|CN815610 HRO4513_E12_I23ZS5 Lib AA071E1X Aven... 36 0.063
>gb|CN817366.1|CN817366 HRO4465_D03_H05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_D03_H05, mRNA sequence
Length = 633
Score = 176 bits (89), Expect = 3e-044
Identities = 287/353 (81%)
Strand = Plus / Plus
Query: 408 cgtggacgacgacgacgagatcttcatcgttgacaggctgaaggagataatcaaatacaa 467
|||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 20 cgtggacgacgacgacgagatcttcatcgtcgacaggctcaaggagatcatcaagtacaa 79
Query: 468 gggcttccaagtacctcctgcggagcttgaagcccttctcatcacacatcctgaaatcaa 527
||||||||| || | || |||||||| || ||||| |||||||| || || || |||||
Sbjct: 80 gggcttccaggtggcgccggcggagctcgaggccctcctcatcacgcacccggacatcaa 139
Query: 528 ggatgccgctgttgtctcgatgaaagatgaagtcgccggcgaagtcccggtggcattcat 587
||| ||||| || || |||| ||||| || ||||||||| ||||| || |||||
Sbjct: 140 ggacgccgccgtcgtaggagtgaaggatgatctctgcggcgaagtgccggtcgccttcat 199
Query: 588 tatacgcagtgaaggctctgagatcagtgagaacgagatcaagcagtttgttgcaaagga 647
| || | ||||| |||||||||| ||||||||||||||||| || || | |||||
Sbjct: 200 caagcggatcgaagggtctgagatcaccgagaacgagatcaagcaattcgtctccaagga 259
Query: 648 ggtcgtgttctacaagaggatcaacagagttttcttcacggattctatcccgaagaatcc 707
||| || ||||||||||||||||||| || | |||||| || || || || ||||| ||
Sbjct: 260 ggttgttttctacaagaggatcaacaaggtctacttcaccgactccattcccaagaaccc 319
Query: 708 ctccggcaagattcttaggaaggacctgagagcgcggcttgccgcgggcatcc 760
||||||||||| || ||||||||| ||||||| |||| ||||| |||||||
Sbjct: 320 ttccggcaagatcctaaggaaggacttgagagccaggctcgccgccggcatcc 372
>gb|CN816052.1|CN816052 HRO4516_D03_H06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_D03_H06, mRNA sequence
Length = 547
Score = 105 bits (53), Expect = 8e-023
Identities = 161/197 (81%)
Strand = Plus / Plus
Query: 564 cggcgaagtcccggtggcattcattatacgcagtgaaggctctgagatcagtgagaacga 623
||||||||||||||| || ||||| | || | ||||| |||||||||| ||||||||
Sbjct: 43 cggcgaagtcccggtcgccttcatcaagcggatcgaaggatctgagatcaccgagaacga 102
Query: 624 gatcaagcagtttgttgcaaaggaggtcgtgttctacaagaggatcaacagagttttctt 683
||||||||| || || | |||||||| || ||||||||||||||||||| || | |||
Sbjct: 103 gatcaagcaattcgtctccaaggaggttgttttctacaagaggatcaacaaggtctactt 162
Query: 684 cacggattctatcccgaagaatccctccggcaagattcttaggaaggacctgagagcgcg 743
||| || || || || ||||| || ||||||||||| || ||||||||| ||||||| |
Sbjct: 163 caccgactccattcccaagaacccttccggcaagatcctaaggaaggacttgagagccag 222
Query: 744 gcttgccgcgggcatcc 760
||| ||||| |||||||
Sbjct: 223 gctcgccgccggcatcc 239
>gb|CN815610.1|CN815610 HRO4513_E12_I23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_E12_I23, mRNA sequence
Length = 820
Score = 36.2 bits (18), Expect = 0.063
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 62 gcgccgcgcccatgggga 79
||||||||||||||||||
Sbjct: 639 gcgccgcgcccatgggga 656
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2583
Number of Sequences: 8143
Number of extensions: 2583
Number of successful extensions: 728
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 4
length of query: 1093
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1077
effective length of database: 4,572,175
effective search space: 4924232475
effective search space used: 4924232475
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)