BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437739.2.1
(574 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE439135.1|BE439135 CDO465_WHE2G0092F ITEC CDO Oat cDNA ... 127 1e-029
>gb|BE439135.1|BE439135 CDO465_WHE2G0092F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO465_WHE2G0092, mRNA sequence
Length = 284
Score = 127 bits (64), Expect = 1e-029
Identities = 94/104 (90%)
Strand = Plus / Minus
Query: 208 gggacgctgccgcggacgtggttcaagtcggtggaccagctgccgatgaactacggcgac 267
|||| |||| || |||| ||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 264 gggaagctggcgaggacatggttaaagtcggtggaccagctgccgatgaacgtgggcgac 205
Query: 268 gagcactacgacccgctgttcccgctcgggttcgggctcaccac 311
||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 204 aagcactacgacccgctgttcccgttcgggttcgggctcaccac 161
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1080
Number of Sequences: 8143
Number of extensions: 1080
Number of successful extensions: 314
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 1
length of query: 574
length of database: 4,702,463
effective HSP length: 16
effective length of query: 558
effective length of database: 4,572,175
effective search space: 2551273650
effective search space used: 2551273650
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)