BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2437714.2.1
         (1649 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|Z48429.1|AFABF1  A.fatua mRNA for DNA-binding protein (c...    38   0.024
gb|CN180782.1|CN180782  As03_isu2287_C ISU cDNA from oat Ave...    34   0.38 
gb|CN816686.1|CN816686  HRO4523_F03_L05ZS5 Lib AA071E1X Aven...    34   0.38 
gb|CN817761.1|CN817761  HRO4461_D02_H03ZS5 Lib AA070E1X Aven...    34   0.38 
gb|CN819030.1|CN819030  HRO4474_B08_D16ZS5 Lib AA070E1X Aven...    34   0.38 
gb|CN820007.1|CN820007  HRO4409_H06_O11ZS5 Lib AA069E1X Aven...    34   0.38 
gb|CN821378.1|CN821378  HRO4424_F06_L12ZS5 Lib AA069E1X Aven...    34   0.38 
gb|AY847064.1|  Avena sativa Aux/IAA3 mRNA, partial cds            34   0.38 

>emb|Z48429.1|AFABF1 A.fatua mRNA for DNA-binding protein (clone ABF1)
          Length = 1459

 Score = 38.2 bits (19), Expect = 0.024
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 553 gacgcgtcgctgccgccgccgccctgc 579
           |||||||||| ||||||||||| ||||
Sbjct: 415 gacgcgtcgccgccgccgccgctctgc 389



>gb|CN180782.1|CN180782 As03_isu2287_C ISU cDNA from oat Avena sativa cDNA clone
           As03_isu2287, mRNA sequence
          Length = 549

 Score = 34.2 bits (17), Expect = 0.38
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 329 tacatagcagcagcagc 345
           |||||||||||||||||
Sbjct: 355 tacatagcagcagcagc 371



>gb|CN816686.1|CN816686 HRO4523_F03_L05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4523_F03_L05, mRNA sequence
          Length = 818

 Score = 34.2 bits (17), Expect = 0.38
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 333 tagcagcagcagcagca 349
           |||||||||||||||||
Sbjct: 657 tagcagcagcagcagca 641



>gb|CN817761.1|CN817761 HRO4461_D02_H03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4461_D02_H03, mRNA sequence
          Length = 685

 Score = 34.2 bits (17), Expect = 0.38
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 334 agcagcagcagcagcat 350
           |||||||||||||||||
Sbjct: 485 agcagcagcagcagcat 501



>gb|CN819030.1|CN819030 HRO4474_B08_D16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4474_B08_D16, mRNA sequence
          Length = 582

 Score = 34.2 bits (17), Expect = 0.38
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 334 agcagcagcagcagcat 350
           |||||||||||||||||
Sbjct: 118 agcagcagcagcagcat 102



>gb|CN820007.1|CN820007 HRO4409_H06_O11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4409_H06_O11, mRNA
           sequence
          Length = 690

 Score = 34.2 bits (17), Expect = 0.38
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 334 agcagcagcagcagcat 350
           |||||||||||||||||
Sbjct: 146 agcagcagcagcagcat 162



>gb|CN821378.1|CN821378 HRO4424_F06_L12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4424_F06_L12, mRNA
           sequence
          Length = 356

 Score = 34.2 bits (17), Expect = 0.38
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 333 tagcagcagcagcagca 349
           |||||||||||||||||
Sbjct: 20  tagcagcagcagcagca 36



>gb|AY847064.1| Avena sativa Aux/IAA3 mRNA, partial cds
          Length = 360

 Score = 34.2 bits (17), Expect = 0.38
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 333 tagcagcagcagcagca 349
           |||||||||||||||||
Sbjct: 139 tagcagcagcagcagca 123



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4632
Number of Sequences: 8143
Number of extensions: 4632
Number of successful extensions: 1699
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1662
Number of HSP's gapped (non-prelim): 27
length of query: 1649
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1632
effective length of database: 4,564,032
effective search space: 7448500224
effective search space used: 7448500224
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)