BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437629.2.2
(1041 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820087.1|CN820087 HRO4410_H10_O20ZS5 Lib AA069E1X Aven... 121 1e-027
gb|CN816531.1|CN816531 HRO4521_G11_M21ZS5 Lib AA071E1X Aven... 34 0.24
gb|CN819587.1|CN819587 HRO4401_H05_O09ZS5 Lib AA069E1X Aven... 34 0.24
>gb|CN820087.1|CN820087 HRO4410_H10_O20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_H10_O20, mRNA
sequence
Length = 657
Score = 121 bits (61), Expect = 1e-027
Identities = 104/117 (88%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 37 gcatttggattcataacatcaacggtggtccttcagactgacaaaggcgacgaagaactg 96
||||||||||| ||| |||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 5 gcatttggatttata-catcaaatgttgtccttcagacagacaaaggcgacgaagaactc 63
Query: 97 tgtagtgtgtatgtgccaacaaatcatctgtacatcggtgatatatttctggtgaac 153
|||||||| ||||||||||||||||| || || || ||||||||||||||| |||||
Sbjct: 64 tgtagtgtttatgtgccaacaaatcacctatatattggtgatatatttctgctgaac 120
Score = 56.0 bits (28), Expect = 7e-008
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 411 ggagggatgaccatgcctcaggtgattgcatcactggagcccatgccacggaaaagccag 470
||||| ||||||||||| ||||||||||| || || || ||||| ||| ||| ||||||
Sbjct: 181 ggaggaatgaccatgccacaggtgattgcgtcgctcgaacccatcccaaagaagagccag 240
Query: 471 aacattcgtctaaatagaat 490
| ||| || |||||||||||
Sbjct: 241 agcatccggctaaatagaat 260
Score = 34.2 bits (17), Expect = 0.24
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 169 agacctaatttatctattcgagaaggaat 197
||||| || ||||| ||||||||||||||
Sbjct: 136 agaccaaacttatccattcgagaaggaat 164
>gb|CN816531.1|CN816531 HRO4521_G11_M21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_G11_M21, mRNA sequence
Length = 841
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 779 ttcattttattttataa 795
|||||||||||||||||
Sbjct: 614 ttcattttattttataa 630
>gb|CN819587.1|CN819587 HRO4401_H05_O09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_H05_O09, mRNA
sequence
Length = 590
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 863 aataaaatagatggatt 879
|||||||||||||||||
Sbjct: 568 aataaaatagatggatt 584
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2868
Number of Sequences: 8143
Number of extensions: 2868
Number of successful extensions: 878
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 872
Number of HSP's gapped (non-prelim): 6
length of query: 1041
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1025
effective length of database: 4,572,175
effective search space: 4686479375
effective search space used: 4686479375
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)